Ss1.1-rspl23_o6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGAAATCTATGTTCCTGCTTCCGTATTCTTATTTACAGCCTCCTGTCAGACTGTTTAC TCAGTTCTGGTTGCTTCCCCTTATTAGTGATTATGTTCACAGCAGCTTTTGTGGTTTCTC AATGGTAACAGTTTTCTCTGAGACAAGATTCTAAGAGAGTCTCCTTGAAGTAATCCCAGA CAGAGGATCAGTCTCCTGAAAAACAGCTCAGAATGGCCACATCCCTGGAAGCCGAGGAAC AAAAAGCCCTTCTAATAGTTAAGGCAGAAGACTGGAGACAGGACTCCACCTCAGGAAAGT ACAGTCCTCACAGAAGGGAACTCTTCAGGCAGCACTTCAGGAAACTGTGCTATCAGGATG CACCTGGACCCCGCGAAGCTCTCACTCAGCTCTCCGAACTTTGCCACCAGTGGCTGAGGC CAGAATGCCACACAAAGGAGCAGATTTTAGTCCTGCTGGTGCTTGAACAATTTCTGAGCA TTCTTCCTAAGGATCTGCAAGCATGGGTGCAGGCACACCATCCAGAGACTGGAGAGGATG CGGTGACTGTGTTGGAGGATCTGGAGAGAGAGCTTGATGAACCTCAAAAGCAGGTTCCAG CCAATTCAGAAAGACAGGACACACTTTTGAACAAGTTGGCCGCCTTAAGAAGGCCACGTG AATCACTGACTATCAAATTCCATCCCAGGAAGACCCAGCAGGAGCAAGAATCTGGGGAGC CTCAAAGGAATGGTGATCAAACCAGGACTAAGAATGAAGAGTTGTCCCAGAAGGAAGATA TACCCAAAGACATGAAATTCCTTGGGGAAATAAACAACAGATCTAACAAAGATACTCCTC AGTATCCTGAATCCAAAGATGCTGTTGAAAGTGAGGTCAGATTCGAGTGGCAACAGAGGG AAAGAAGACGCTATAAATGTGATGACTGTGGAAAAAGTTTTAGTCATAGCTCAGACCTGA GTAAACACAGGAGAACTCACACTGGAGAGAAGCCCTACAAATGTGATGAATGTGGAAAAG CCTTCATTCAACGCTCACATCTCATTGGACATCATAGAGTACACACTGGCGTGAAACCCT ATAAATGTAAAGAATGTGGGAAAGATTTTAGTGGACGCACAGGTCTTATTCAACATCAGA GAATCCACACAGGTGAAAAACCCTATGAATGTGATGAGTGCGGGAGGCCTTTCCGAGTAA GTTCAGCCCTTATTAGACATCAAAGAATTCATACAGCAAATAAGCTCTACTAATATGGTG AAGTAACAAAAGTGCTTTAGACACTCAGGCCTAATTAGTTATCAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGAAATCTATGTTCCTGCTTCCGTATTCTTATTTACAGCCTCCTGTCAGACTGTTTAC TCAGTTCTGGTTGCTTCCCCTTATTAGTGATTATGTTCACAGCAGCTTTTGTGGTTTCTC AATGGTAACAGTTTTCTCTGAGACAAGATTCTAAGAGAGTCTCCTTGAAGTAATCCCAGA CAGAGGATCAGTCTCCTGAAAAACAGCTCAGAATGGCCACATCCCTGGAAGCCGAGGAAC AAAAAGCCCTTCTAATAGTTAAGGCAGAAGACTGGAGACAGGACTCCACCTCAGGAAAGT ACAGTCCTCACAGAAGGGAACTCTTCAGGCAGCACTTCAGGAAACTGTGCTATCAGGATG CACCTGGACCCCGCGAAGCTCTCACTCAGCTCTCCGAACTTTGCCACCAGTGGCTGAGGC CAGAATGCCACACAAAGGAGCAGATTTTAGTCCTGCTGGTGCTTGAACAATTTCTGAGCA TTCTTCCTAAGGATCTGCAAGCATGGGTGCAGGCACACCATCCAGAGACTGGAGAGGATG CGGTGACTGTGTTGGAGGATCTGGAGAGAGAGCTTGATGAACCTCAAAAGCAGGTTCCAG CCAATTCAGAAAGACAGGACACACTTTTGAACAAGTTGGCCGCCTTAAGAAGGCCACGTG AATCACTGACTATCAAATTCCATCCCAGGAAGACCCAGCAGGAGCAAGAATCTGGGGAGC CTCAAAGGAATGGTGATCAAACCAGGACTAAGAATGAAGAGTTGTCCCAGAAGGAAGATA TACCCAAAGACATGAAATTCCTTGGGGAAATAAACAACAGATCTAACAAAGATACTCCTC AGTATCCTGAATCCAAAGATGCTGTTGAAAGTGAGGTCAGATTCGAGTGGCAACAGAGGG AAAGAAGACGCTATAAATGTGATGACTGTGGAAAAAGTTTTAGTCATAGCTCAGACCTGA GTAAACACAGGAGAACTCACACTGGAGAGAAGCCCTACAAATGTGATGAATGTGGAAAAG CCTTCATTCAACGCTCACATCTCATTGGACATCATAGAGTACACACTGGCGTGAAACCCT ATAAATGTAAAGAATGTGGGAAAGATTTTAGTGGACGCACAGGTCTTATTCAACATCAGA GAATCCACACAGGTGAAAAACCCTATGAATGTGATGAGTGCGGGAGGCCTTTCCGAGTAA GTTCAGCCCTTATTAGACATCAAAGAATTCATACAGCAAATAAGCTCTACTAATATGGTG AAGTAACAAAAGTGCTTTAGACACTCAGGCCTAATTAGTTATCAGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 181-294, - strand, RNAz p=0.698453 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 181-294, - strand, RNAz p=0.698453 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 49-595, gnl|bosTau2|chr23 (24647905-24648459) | |
| 49-595, gnl|Hg17|chr6 (28201013-28201589) | |
| 322-583, gnl|bosTau2|chr19 (14951292-14951031) | |
| 322-583, gnl|Hg17|chr17 (4953681-4953423) | |
| 322-583, gnl|Mm7|chr5 (137070883-137071144) | |
| 330-573, gnl|bosTau2|chr15 (19143619-19143376) | |
| 330-573, gnl|canFam2|chr5 (13721301-13720956) | |
| 330-573, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 330-573, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 330-573, gnl|hg17|chr11 (123106317-123106662) | |
| 330-573, gnl|Hg17|chr11 (123106668-123106425) | |
| 330-573, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 330-573, gnl|mm7|chr9 (40137679-40137340) | |
| 330-573, gnl|Mm7|chr9 (40137332-40137575) | |
| 330-573, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 330-573, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 330-573, gnl|panTro1|chr9 (125147706-125148051) | |
| 330-573, gnl|rheMac2|chr14 (122093376-122093720) | |
| 330-573, gnl|rn3|chr8 (43167739-43167398) | |
| 330-573, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 905-1308, gnl|bosTau2|chr10 (8996760-8996355) | |
| 905-1308, gnl|Hg17|chr19 (42818565-42818076) | |
| 905-1308, gnl|Mm7|chr2 (127310191-127309786) | |
| 912-1263, gnl|bosTau2|chr10 (8996333-8995982) | |
| 912-1263, gnl|Hg17|chr19 (42818054-42817755) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-595, gnl|bosTau2|chr23 (24647905-24648459) | |
| 49-595, gnl|Hg17|chr6 (28201013-28201589) | |
| 322-583, gnl|bosTau2|chr19 (14951292-14951031) | |
| 322-583, gnl|Hg17|chr17 (4953681-4953423) | |
| 322-583, gnl|Mm7|chr5 (137070883-137071144) | |
| 330-573, gnl|bosTau2|chr15 (19143619-19143376) | |
| 330-573, gnl|canFam2|chr5 (13721301-13720956) | |
| 330-573, gnl|dasNov1|scaffold_93729 (5833-5513) | |
| 330-573, gnl|echTel1|scaffold_303413 (80665-81002) | |
| 330-573, gnl|hg17|chr11 (123106317-123106662) | |
| 330-573, gnl|Hg17|chr11 (123106668-123106425) | |
| 330-573, gnl|loxAfr1|scaffold_11701 (33363-33018) | |
| 330-573, gnl|mm7|chr9 (40137679-40137340) | |
| 330-573, gnl|Mm7|chr9 (40137332-40137575) | |
| 330-573, gnl|monDom2|scaffold_2 (112722771-112722438) | |
| 330-573, gnl|oryCun1|scaffold_143249 (14890-14545) | |
| 330-573, gnl|panTro1|chr9 (125147706-125148051) | |
| 330-573, gnl|rheMac2|chr14 (122093376-122093720) | |
| 330-573, gnl|rn3|chr8 (43167739-43167398) | |
| 330-573, gnl|xenTro1|scaffold_1098 (193190-192830) | |
| 905-1308, gnl|bosTau2|chr10 (8996760-8996355) | |
| 905-1308, gnl|Hg17|chr19 (42818565-42818076) | |
| 905-1308, gnl|Mm7|chr2 (127310191-127309786) | |
| 912-1263, gnl|bosTau2|chr10 (8996333-8995982) | |
| 912-1263, gnl|Hg17|chr19 (42818054-42817755) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.145603) | |
| spl (0.143184) |