Non-Coding RNA Search

Ss1.1-rspl24_a9.5

Sequence:


               
               ATTTGGAGGGCTTCTCTCAAGCACAGGTGTGGGCTGGAGGGTCCTGGAGCAGGCAGGATT
GGCATGGGGCTGTGTGGCGACTCCTGTGTGTGTGGTCCTAGAAGAGTCTATTGGAGAATG
GACCTCAAAAGTAACACCGAGATCTACCTGCCACCACCCTGGACACATTTTTGCAGGGCT
TTATTTTTTTAAGTCTTTCATTTTAGAGATAGACAACAAGGGCAGTCAAACTGTTCTAAG
CACCTGCCAGCATGTTTCCCTGTCTGCCATGGCCCAGTGAAGCCTTATGTGACATGGTAA
ACCTGGAACAACAGACAAGGCAAGTAGGGTGTGCGGTACTGCATAAATTACACATTTTCA
CAGTCTTGGGTGGTTCCTGCAAAGATGATTTGACCTATAAAAACTGGTGAGATTTTTTTT
TCATCTTTAGTTTGAATTTTTTCCCCAAGTGTACTTAATCACCTTAGTGCCAGTTTAATC
CAGTTATGCAGAAATCATAATGGATGTTTAATGCAGAACTCTGTGCCATCCTACTCCAGG
CCCTTCCTGGTGTACTTGGGAAGTGGGAAAGAGCCCTCAGTTGGAGGGATCTGATCACTC
CTGATGGATGGAGGGGTGACCTTGGATGTATTAAAACCCTCACCCTTAAAAGGTTAATAA
ACAGGGTTAAGTGACCAGTTGTTTGCCAAGTTGATAGCTGAGAATACCTTAGATAATAGG
ACTTAAGTCAAACAAATGTACTTTGTAGTGAATGCAAAATAGTGTGATTCATATGAAGAG
TTTTCAGAGGTTGCCTGCAGAGGGGAATATTGCTTTAGTAATACTCAGTGAAAAAAACTG
CATTTCAAACCCAAATAATAACTGCCAAATCTAATTACAATAAGAAGAGTTATCTTTGGG
CATTGTGTTAGTTTTCTATTGCTGTGTAACAAATTACCCCAAATAATAACAGCTTAAACC
AGCACTCACTTCTTAGCTTACAGTTCTGTAGCTCATGAGTCCAGCACTATGGCTGGATTC
TCTGCTCAGGGTCTCACAAGGCTGAAATCAAGGGTCAGCAGGGCAGGATTCCTTTATGGA
GGCTCTGGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGGAGGGCTTCTCTCAAGCACAGGTGTGGGCTGGAGGGTCCTGGAGCAGGCAGGATT
GGCATGGGGCTGTGTGGCGACTCCTGTGTGTGTGGTCCTAGAAGAGTCTATTGGAGAATG
GACCTCAAAAGTAACACCGAGATCTACCTGCCACCACCCTGGACACATTTTTGCAGGGCT
TTATTTTTTTAAGTCTTTCATTTTAGAGATAGACAACAAGGGCAGTCAAACTGTTCTAAG
CACCTGCCAGCATGTTTCCCTGTCTGCCATGGCCCAGTGAAGCCTTATGTGACATGGTAA
ACCTGGAACAACAGACAAGGCAAGTAGGGTGTGCGGTACTGCATAAATTACACATTTTCA
CAGTCTTGGGTGGTTCCTGCAAAGATGATTTGACCTATAAAAACTGGTGAGATTTTTTTT
TCATCTTTAGTTTGAATTTTTTCCCCAAGTGTACTTAATCACCTTAGTGCCAGTTTAATC
CAGTTATGCAGAAATCATAATGGATGTTTAATGCAGAACTCTGTGCCATCCTACTCCAGG
CCCTTCCTGGTGTACTTGGGAAGTGGGAAAGAGCCCTCAGTTGGAGGGATCTGATCACTC
CTGATGGATGGAGGGGTGACCTTGGATGTATTAAAACCCTCACCCTTAAAAGGTTAATAA
ACAGGGTTAAGTGACCAGTTGTTTGCCAAGTTGATAGCTGAGAATACCTTAGATAATAGG
ACTTAAGTCAAACAAATGTACTTTGTAGTGAATGCAAAATAGTGTGATTCATATGAAGAG
TTTTCAGAGGTTGCCTGCAGAGGGGAATATTGCTTTAGTAATACTCAGTGAAAAAAACTG
CATTTCAAACCCAAATAATAACTGCCAAATCTAATTACAATAAGAAGAGTTATCTTTGGG
CATTGTGTTAGTTTTCTATTGCTGTGTAACAAATTACCCCAAATAATAACAGCTTAAACC
AGCACTCACTTCTTAGCTTACAGTTCTGTAGCTCATGAGTCCAGCACTATGGCTGGATTC
TCTGCTCAGGGTCTCACAAGGCTGAAATCAAGGGTCAGCAGGGCAGGATTCCTTTATGGA
GGCTCTGGGGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               148-263, + strand, RNAz p=0.553995
               

               
               941-1092, - strand, RNAz p=0.882551

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-263, + strand, RNAz p=0.553995
               

               
               941-1092, - strand, RNAz p=0.882551

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749415, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749415, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr22 (14310887-14309782)
               

               
               1-1092, gnl|Hg17|chr3 (42663353-42664474)
               

               
               1-1092, gnl|Mm7|chr9 (121457151-121458309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr22 (14310887-14309782)
               

               
               1-1092, gnl|Hg17|chr3 (42663353-42664474)
               

               
               1-1092, gnl|Mm7|chr9 (121457151-121458309)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	148-263, + strand, RNAz p=0.553995
	941-1092, - strand, RNAz p=0.882551

	1-1092, gnl\|bosTau2\|chr22 (14310887-14309782)
	1-1092, gnl\|Hg17\|chr3 (42663353-42664474)
	1-1092, gnl\|Mm7\|chr9 (121457151-121458309)