Non-Coding RNA Search

Ss1.1-rspl24_g13.5

Sequence:


               
               CAACTTTCTCAATTATTTTCTCATTCACAGCAGTAACATTCAGCAAATCCTTCTGTTGAT
GGGAATTTACAACAGTAATTCTTGCTATTAAAGAAGTCCATCAACCCCAAAATTTGTTTC
ATAGATCACAATTTTAATTCACAGATTCCAGATTTGAACTATTTCTATGTGGCCCAGTAA
CTATTTTGACAAAGGATTTTGGCTATTTTCGGGAATTTGTCAGCTCATTTGTGTCAGTTT
TCACACGTGGTATTATATGACTAGCTACCTAATAGGGCCAGTTCCCCTATATCTCAGCAG
TCTTTAACACAGAGTTTATGGAGTTGGTGATTGTTAGGCAAGTACCATAAGCAAGATGCA
CGCGATGGATACATCTTACGAAAGTCTGTATGCGTGAAATTTGAGTTGGCATTTTCACTG
GCCAGTTTTCTTCATCTGTATTCTCTCCTTACACAGAATACATGAGAACCGTAGTTCCCT
CAATGTAAAATATTTTTTCCGTTTTTGAATTTCGTTACATCTCTTCAGTTAAACTTGCTG
GAGACCAGTAACCACCTTAAATGCCAGTCAGTGCTGCCTGCATCCCACTTGAGTGAAATG
GCCTTCTTGTTCAGCTGTTACAGACCTAGATTGTTTGGGCACCTCAGAACATCTCATCTT
TTATAGGTGGTCAGTAGGTACTAGTCATCTTATGACTATTGATTTGGGCACTGGAACATA
CCTGAACAAAAAATTACTTTGTCTTACACTTGTCTCTATATTCACTTAAATCCAAGAATC
CCATCTAAAACACACACACCTTGTCTGACACCCCTGCACTCCCCTGACCAAGTCAGAAAG
GAGATGGGGGCAAGTGAAAGATGATTCTAGATGTAGACGTTAGCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTTTCTCAATTATTTTCTCATTCACAGCAGTAACATTCAGCAAATCCTTCTGTTGAT
GGGAATTTACAACAGTAATTCTTGCTATTAAAGAAGTCCATCAACCCCAAAATTTGTTTC
ATAGATCACAATTTTAATTCACAGATTCCAGATTTGAACTATTTCTATGTGGCCCAGTAA
CTATTTTGACAAAGGATTTTGGCTATTTTCGGGAATTTGTCAGCTCATTTGTGTCAGTTT
TCACACGTGGTATTATATGACTAGCTACCTAATAGGGCCAGTTCCCCTATATCTCAGCAG
TCTTTAACACAGAGTTTATGGAGTTGGTGATTGTTAGGCAAGTACCATAAGCAAGATGCA
CGCGATGGATACATCTTACGAAAGTCTGTATGCGTGAAATTTGAGTTGGCATTTTCACTG
GCCAGTTTTCTTCATCTGTATTCTCTCCTTACACAGAATACATGAGAACCGTAGTTCCCT
CAATGTAAAATATTTTTTCCGTTTTTGAATTTCGTTACATCTCTTCAGTTAAACTTGCTG
GAGACCAGTAACCACCTTAAATGCCAGTCAGTGCTGCCTGCATCCCACTTGAGTGAAATG
GCCTTCTTGTTCAGCTGTTACAGACCTAGATTGTTTGGGCACCTCAGAACATCTCATCTT
TTATAGGTGGTCAGTAGGTACTAGTCATCTTATGACTATTGATTTGGGCACTGGAACATA
CCTGAACAAAAAATTACTTTGTCTTACACTTGTCTCTATATTCACTTAAATCCAAGAATC
CCATCTAAAACACACACACCTTGTCTGACACCCCTGCACTCCCCTGACCAAGTCAGAAAG
GAGATGGGGGCAAGTGAAAGATGATTCTAGATGTAGACGTTAGCTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               203-888, gnl|bosTau2|chr17 (6862694-6862036)
               

               
               203-888, gnl|Hg17|chr1 (142627512-142626828)
               

               
               203-888, gnl|Mm7|chr16 (13413395-13412817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-888, gnl|bosTau2|chr17 (6862694-6862036)
               

               
               203-888, gnl|Hg17|chr1 (142627512-142626828)
               

               
               203-888, gnl|Mm7|chr16 (13413395-13412817)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	203-888, gnl\|bosTau2\|chr17 (6862694-6862036)
	203-888, gnl\|Hg17\|chr1 (142627512-142626828)
	203-888, gnl\|Mm7\|chr16 (13413395-13412817)

	nlu (0.191681)
	fbs (0.175346)
	csp (0.161186)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	sug (0.127291)
	cty (0.10408)