Non-Coding RNA Search

Ss1.1-rspl24_p14.5

Sequence:


               
               GAGAAACCCTACAAATGTGAGGAGTGTGACAAGAGCTTCAGTCAGGCCATAGACTTCCGT
GTGCATCAGAGAGTCCACACTGGGGAGAAGCCCTACACGTGTAGCATCTGTGGGAAGGGC
TTCAGTCAGTCCTCTGGTCTCCAGTCCCACCAGCGGGTCCACACTGGGGAGAAGCCGTAT
AAATGTGATGTGTGCGGAAAGGGCTTCAGGTACAGTTCGCAGTTCATATACCACCAGCGA
GGCCACACTGGCGAAAAGCCTTACAAATGCGAGGAGTGTGGGAAAGGCTTCGGGAGGAGC
TTGAATCTTCGCCATCACCAGAGGGTCCACACAGGAGAGAAACCCCATAAGTGTGAGGAG
TGTGGTAAGGCCTTCAGTCTCCCCTCAAACCTTCGCGTCCATCTGAGTGTCCACACGAGG
GAGAAACTGTTTAAATGCGAGGAGTGCGGGAAGGGCTTCAGTCAGAGTTCACGGCTTCAG
GCCCACCGGAGGGTCCACACGGGAGAAAAACCATACAAGTGTGCCGTCTGTGGTAAGGAC
TTCACTCACCGTTCCCGGCTCACATACCACCAGAAAGTCCACGCTGGCAAGAATCTTTGA
AAAGGAGAAGTGTGTTAATGGCTTTAGTCAGGAGACACACCTTCAGGTTTTTGCAGCGAC
CACACAGGTGATGAACCATGAAGTATCGAGAGTGGAGAGGGCTTCCTTCAGATGGACTCT
TTCTAACAAATCCATTAAAATGATGCCATAGCCATAGGGGAGGAATCGGTTGTAACCCTC
TTGGTAAGATCCACTTGATATAAAGGATCTTTCAAAGTGAATATATGCCTAACACTAATA
TGTGAAAAGGATATTTGCCATAGACTATTGAGTTCTGGGGGGGAGGTCAAAGAGTTCGGG
ATTATTTTTCCTTCGGCTTCCATTTTATACTTATTTACAGGGACCCATTTTTACCAAAGC
TGTCAAACTTATGAAAAATGAAATGAATAAAATTACTGATGATTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAACCCTACAAATGTGAGGAGTGTGACAAGAGCTTCAGTCAGGCCATAGACTTCCGT
GTGCATCAGAGAGTCCACACTGGGGAGAAGCCCTACACGTGTAGCATCTGTGGGAAGGGC
TTCAGTCAGTCCTCTGGTCTCCAGTCCCACCAGCGGGTCCACACTGGGGAGAAGCCGTAT
AAATGTGATGTGTGCGGAAAGGGCTTCAGGTACAGTTCGCAGTTCATATACCACCAGCGA
GGCCACACTGGCGAAAAGCCTTACAAATGCGAGGAGTGTGGGAAAGGCTTCGGGAGGAGC
TTGAATCTTCGCCATCACCAGAGGGTCCACACAGGAGAGAAACCCCATAAGTGTGAGGAG
TGTGGTAAGGCCTTCAGTCTCCCCTCAAACCTTCGCGTCCATCTGAGTGTCCACACGAGG
GAGAAACTGTTTAAATGCGAGGAGTGCGGGAAGGGCTTCAGTCAGAGTTCACGGCTTCAG
GCCCACCGGAGGGTCCACACGGGAGAAAAACCATACAAGTGTGCCGTCTGTGGTAAGGAC
TTCACTCACCGTTCCCGGCTCACATACCACCAGAAAGTCCACGCTGGCAAGAATCTTTGA
AAAGGAGAAGTGTGTTAATGGCTTTAGTCAGGAGACACACCTTCAGGTTTTTGCAGCGAC
CACACAGGTGATGAACCATGAAGTATCGAGAGTGGAGAGGGCTTCCTTCAGATGGACTCT
TTCTAACAAATCCATTAAAATGATGCCATAGCCATAGGGGAGGAATCGGTTGTAACCCTC
TTGGTAAGATCCACTTGATATAAAGGATCTTTCAAAGTGAATATATGCCTAACACTAATA
TGTGAAAAGGATATTTGCCATAGACTATTGAGTTCTGGGGGGGAGGTCAAAGAGTTCGGG
ATTATTTTTCCTTCGGCTTCCATTTTATACTTATTTACAGGGACCCATTTTTACCAAAGC
TGTCAAACTTATGAAAAATGAAATGAATAAAATTACTGATGATTTCCT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-631, gnl|bosTau2|chr10 (8996762-8996130)
               

               
               1-631, gnl|Hg17|chr19 (42818567-42817851)
               

               
               1-631, gnl|Mm7|chr2 (127310193-127309645)
               


               
               813-952, gnl|bosTau2|chr11 (19443137-19443281)
               

               
               813-952, gnl|Hg17|chr19 (49433075-49433205)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-631, gnl|bosTau2|chr10 (8996762-8996130)
               

               
               1-631, gnl|Hg17|chr19 (42818567-42817851)
               

               
               1-631, gnl|Mm7|chr2 (127310193-127309645)
               


               
               813-952, gnl|bosTau2|chr11 (19443137-19443281)
               

               
               813-952, gnl|Hg17|chr19 (49433075-49433205)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ssp (0.13552)

	1-631, gnl\|bosTau2\|chr10 (8996762-8996130)
	1-631, gnl\|Hg17\|chr19 (42818567-42817851)
	1-631, gnl\|Mm7\|chr2 (127310193-127309645)

	813-952, gnl\|bosTau2\|chr11 (19443137-19443281)
	813-952, gnl\|Hg17\|chr19 (49433075-49433205)