Non-Coding RNA Search

Ss1.1-rspl24_p7.5

Sequence:


               
               GCCGCTTTGCCCCGCCTACCGCAAGGAGGTCGTGGGACTGGTGGACGATCGCGTGTGCAA
GAAGTGCCCACCGCAGCGCCTGGCGCGCTTCGAAGAGGAGTGCCGAAAGTACCGCACGCT
GGTCATCAAGGGCGTGCGCGTTTTTGATGTGGCCGTGTTGGCGCCACTGCTGCGCGACCC
CACCCTGGACCTCAAGGTCATCCACCTGGTGCGTGATCCCCGGGCTGTTGCCAGTTCACG
GATCCGTTCGCGCCATGGACTCATCCGTGAAAGCCTACAGGTGGTGCGCAGCCGGGACCC
GCGAGCCCACCGCATGCCCTTCTTAGAAGCCGCTGGCCACAAGCTGGGCGCCAAGAAGGA
GGGCATAGGAGGGCCAGCCGACTACCACGCCCTTGGCGCCATGGAGGTCATCTGCAACAG
CATGGCCAAGACGCTGCAGACTGCCCTACAGCCTCCTGACTGGCTGCAAGGCCACTACCT
GGTGGTGCGGTACGAGGACCTGGTGGGAGACCCCGTCAAGACCCTAAGGAGGGTGTACGA
CTTTGTGGGGTTGCTGGTGAGCCCTGAAATGGAGCAGTTTGCCCTCAACATGACCAGTGG
CTCGGGCTCCTCCTCCAAGCCTTTCGTGGTGTCCGCACGCAACGCCACGCAGGCCGCCAA
CGCCTGGCGGACCGCCCTCACCTTTCAGCAGATCAAACAGGTGGAGGAGTTTTGCTACCA
GCCCATGGCCGTGCTGGGCTACGAGCGGGTCAATAGCCCTGAGGAGGTCAAAGACCTCAG
CAAGACCCTGCTCCGGAAACCCCGGCTCTGAGCGTGGTTCCCGGGAGACCTGACTTCCCG
TAGAGACACCCACAGGAGGATTGTGGTGTGTTTCAACAAAAACAGACCAGATCCAAACTG
AGGAAGCCCACATACTCAATTATAGATACATAATATAAATAACCACACAGGCACTTGCTG
TCAATGTTTTGAATCATTGAATTCAAGGAACAGCCACAATACACATCTCAGAAAAGGCAA
GACTTGAAAGTTCTGACCAGCTGCCCCTATTTTTCTCTCCTCTCTTCTCTCCTCTGCTTT
TTCTCCTTTCCCTTTTCTCCCATTTCCTCCCCTCTCCTCTACCTGACTTCCATTTGGAAG
TGAGATGTTGATTAAATCAAGATCCAGTAATCCAAATCTTGTTTACAAAATTTTCGTGGT
ATCTGTGAACATGTGAAAGAATCCTTTGGATGTTGGGGGGGTGGGGTGGGGTGGAGAAAG
GGGAAAGTGGTCCAGGAGCTAAAAGCCCCACTGGGCATGCTAAATCATGGAGGCATTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTTTGCCCCGCCTACCGCAAGGAGGTCGTGGGACTGGTGGACGATCGCGTGTGCAA
GAAGTGCCCACCGCAGCGCCTGGCGCGCTTCGAAGAGGAGTGCCGAAAGTACCGCACGCT
GGTCATCAAGGGCGTGCGCGTTTTTGATGTGGCCGTGTTGGCGCCACTGCTGCGCGACCC
CACCCTGGACCTCAAGGTCATCCACCTGGTGCGTGATCCCCGGGCTGTTGCCAGTTCACG
GATCCGTTCGCGCCATGGACTCATCCGTGAAAGCCTACAGGTGGTGCGCAGCCGGGACCC
GCGAGCCCACCGCATGCCCTTCTTAGAAGCCGCTGGCCACAAGCTGGGCGCCAAGAAGGA
GGGCATAGGAGGGCCAGCCGACTACCACGCCCTTGGCGCCATGGAGGTCATCTGCAACAG
CATGGCCAAGACGCTGCAGACTGCCCTACAGCCTCCTGACTGGCTGCAAGGCCACTACCT
GGTGGTGCGGTACGAGGACCTGGTGGGAGACCCCGTCAAGACCCTAAGGAGGGTGTACGA
CTTTGTGGGGTTGCTGGTGAGCCCTGAAATGGAGCAGTTTGCCCTCAACATGACCAGTGG
CTCGGGCTCCTCCTCCAAGCCTTTCGTGGTGTCCGCACGCAACGCCACGCAGGCCGCCAA
CGCCTGGCGGACCGCCCTCACCTTTCAGCAGATCAAACAGGTGGAGGAGTTTTGCTACCA
GCCCATGGCCGTGCTGGGCTACGAGCGGGTCAATAGCCCTGAGGAGGTCAAAGACCTCAG
CAAGACCCTGCTCCGGAAACCCCGGCTCTGAGCGTGGTTCCCGGGAGACCTGACTTCCCG
TAGAGACACCCACAGGAGGATTGTGGTGTGTTTCAACAAAAACAGACCAGATCCAAACTG
AGGAAGCCCACATACTCAATTATAGATACATAATATAAATAACCACACAGGCACTTGCTG
TCAATGTTTTGAATCATTGAATTCAAGGAACAGCCACAATACACATCTCAGAAAAGGCAA
GACTTGAAAGTTCTGACCAGCTGCCCCTATTTTTCTCTCCTCTCTTCTCTCCTCTGCTTT
TTCTCCTTTCCCTTTTCTCCCATTTCCTCCCCTCTCCTCTACCTGACTTCCATTTGGAAG
TGAGATGTTGATTAAATCAAGATCCAGTAATCCAAATCTTGTTTACAAAATTTTCGTGGT
ATCTGTGAACATGTGAAAGAATCCTTTGGATGTTGGGGGGGTGGGGTGGGGTGGAGAAAG
GGGAAAGTGGTCCAGGAGCTAAAAGCCCCACTGGGCATGCTAAATCATGGAGGCATTCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|34865605|ref|XP_345971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34865605|ref|XP_345971.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               360-559, - strand, RNAz p=0.992319
               

               
               600-878, - strand, RNAz p=0.974959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-559, - strand, RNAz p=0.992319
               

               
               600-878, - strand, RNAz p=0.974959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr1 (78742684-78743976)
               

               
               1-1320, gnl|Hg17|chr3 (144323139-144324431)
               

               
               1-1320, gnl|Mm7|chr9 (95051338-95049992)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr1 (78742684-78743976)
               

               
               1-1320, gnl|Hg17|chr3 (144323139-144324431)
               

               
               1-1320, gnl|Mm7|chr9 (95051338-95049992)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               fcc (0.593354)
               

               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               spl (0.286369)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               spl (0.286369)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	360-559, - strand, RNAz p=0.992319
	600-878, - strand, RNAz p=0.974959

	1-1320, gnl\|bosTau2\|chr1 (78742684-78743976)
	1-1320, gnl\|Hg17\|chr3 (144323139-144324431)
	1-1320, gnl\|Mm7\|chr9 (95051338-95049992)

	fcc (0.593354)
	elu (0.385356)
	cje (0.330469)
	spl (0.286369)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	lyg (0.133103)
	eep (0.122564)
	cly (0.120642)
	ecc (0.115035)
	cty (0.10408)