Non-Coding RNA Search

Ss1.1-rspl25_h9.5

Sequence:


               
               CCCGTCTCGCTGGTGTGTGCAGAGGGATGTGTGTGCTCTCCTTTCTGTGTAAGTTTTTGT
TGTGCTGTATCCAAATTTAAAGGATGGTTTTGTCCTTTTTTAGCCTTTAGATGAAGCCAC
TCTTACAGAGTTAAAAACAGTCCTGAAGAGCTTCCTAAGTAAAGGCCAAATATTGAAGTT
GGAAGTGAAGGTAGGTCTTTAATTATGTGAAGCATTTCCTCAAGTTACGTGACACTTACA
TTGGCTGTGGAAAGTGGAAATTAGATGTGATTGTGTCGTGATTTGCCTGGAGTAGACCCT
TCATATTTATTTTCAACATAATTGATAACTGAGTCCATTCATAATTTAACGTCTGTCTTT
TTCTAAATGTAATTAGAACATCTCACACGTAGACTTTATGTAACACGTAGACTTTGCAGA
GCAGTTTTTCATCTTTCTCTTTGATTAATGAAACATCGGTGTGTTTTCACATTTCTAACC
CATTTCCTTTCCTAGGTTGATCCATCAATCATGGGCGGAATGATTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGTCTCGCTGGTGTGTGCAGAGGGATGTGTGTGCTCTCCTTTCTGTGTAAGTTTTTGT
TGTGCTGTATCCAAATTTAAAGGATGGTTTTGTCCTTTTTTAGCCTTTAGATGAAGCCAC
TCTTACAGAGTTAAAAACAGTCCTGAAGAGCTTCCTAAGTAAAGGCCAAATATTGAAGTT
GGAAGTGAAGGTAGGTCTTTAATTATGTGAAGCATTTCCTCAAGTTACGTGACACTTACA
TTGGCTGTGGAAAGTGGAAATTAGATGTGATTGTGTCGTGATTTGCCTGGAGTAGACCCT
TCATATTTATTTTCAACATAATTGATAACTGAGTCCATTCATAATTTAACGTCTGTCTTT
TTCTAAATGTAATTAGAACATCTCACACGTAGACTTTATGTAACACGTAGACTTTGCAGA
GCAGTTTTTCATCTTTCTCTTTGATTAATGAAACATCGGTGTGTTTTCACATTTCTAACC
CATTTCCTTTCCTAGGTTGATCCATCAATCATGGGCGGAATGATTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               411-528, - strand, RNAz p=0.943247

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               411-528, - strand, RNAz p=0.943247

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-528, gnl|bosTau2|chr1 (1697163-1696689)
               

               
               20-528, gnl|Hg17|chr21 (34198264-34197781)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-528, gnl|bosTau2|chr1 (1697163-1696689)
               

               
               20-528, gnl|Hg17|chr21 (34198264-34197781)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               gul (0.177588)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)

	20-528, gnl\|bosTau2\|chr1 (1697163-1696689)
	20-528, gnl\|Hg17\|chr21 (34198264-34197781)

	gul (0.177588)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	sug (0.127291)