Non-Coding RNA Search

Ss1.1-rspl26_k1.5

Sequence:


               
               GGATGCTAGTCAGATTGGTTAACTGCTGAGCCACGACAGGAACTCCAATATTGTGTGTTA
TAAGAATAAGCTGTATAGTGTGTCATTCCCCTCTTCTACCCCGACCCCAAGATTATTTAG
ACCAGCTGGCTCTAAGTCACTTCTGTGTTCATGGATGTCACACTACCTTCTGTCTTTCTA
CTGAGTTTCCCTTCAGAAGATTCTTCTGTGGAACTGTCTGCATTTGGGTTGTATGGCATT
TTTTTTAGCTTTCTAGCCATCCCACCTCTATGACTCATTGTGTATGTTGAAACTTACAGC
AAGGATAGAATTGCAGAAAAGAGCTTCAAGCTTCATGTCAATAGAGAAAACTAAAATTTG
CTGGCTTATAGTCGTGAGCACAGCTCTGTGTCCTGGGAAGTCATTAGTGGGAGATGGAGT
TACAGCAGGCATGATTATTAGGAGAATGCTAGAGATGATCAGCAATCAAACCTAGGAGCC
AGGGATTTGGCTTTGGGACCTACGAAAAAGGAACAGATCTCAGAGTGACCCATTATAAGG
AGGGCCTGAGTGGATAATATAAACTGGGAAGCTGGTTGTGATCCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGCTAGTCAGATTGGTTAACTGCTGAGCCACGACAGGAACTCCAATATTGTGTGTTA
TAAGAATAAGCTGTATAGTGTGTCATTCCCCTCTTCTACCCCGACCCCAAGATTATTTAG
ACCAGCTGGCTCTAAGTCACTTCTGTGTTCATGGATGTCACACTACCTTCTGTCTTTCTA
CTGAGTTTCCCTTCAGAAGATTCTTCTGTGGAACTGTCTGCATTTGGGTTGTATGGCATT
TTTTTTAGCTTTCTAGCCATCCCACCTCTATGACTCATTGTGTATGTTGAAACTTACAGC
AAGGATAGAATTGCAGAAAAGAGCTTCAAGCTTCATGTCAATAGAGAAAACTAAAATTTG
CTGGCTTATAGTCGTGAGCACAGCTCTGTGTCCTGGGAAGTCATTAGTGGGAGATGGAGT
TACAGCAGGCATGATTATTAGGAGAATGCTAGAGATGATCAGCAATCAAACCTAGGAGCC
AGGGATTTGGCTTTGGGACCTACGAAAAAGGAACAGATCTCAGAGTGACCCATTATAAGG
AGGGCCTGAGTGGATAATATAAACTGGGAAGCTGGTTGTGATCCTGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               408-514, + strand, RNAz p=0.682922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-514, + strand, RNAz p=0.682922

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               139-588, gnl|bosTau2|chr3 (73492367-73492824)
               

               
               139-588, gnl|Hg17|chr1 (39137578-39138050)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-588, gnl|bosTau2|chr3 (73492367-73492824)
               

               
               139-588, gnl|Hg17|chr1 (39137578-39138050)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.286369)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)

	139-588, gnl\|bosTau2\|chr3 (73492367-73492824)
	139-588, gnl\|Hg17\|chr1 (39137578-39138050)