Ss1.1-rspl26_l24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAACCCGCCCTACAGCTACTACCTGTATTACATGTACGCCAACATCATGGTGCTCAAC AACCTGCGCAGGGAACGGGGCCTGAGCACGTTCCTGTTCCGGCCTCACTGCGGGGAGGCC GGCTCCATTACCCACCTGGTGTCTGCTTTCCTGACCGCCGACAATATTTCCCATGGGCTG CTCCTCAAGAAGAGTCCGGTGCTGCAGTATCTCTACTACCTTGCTCAGATCCCCATCGCC ATGTCTCCTCTTAGCAACAACAGCCTGTTCCTCGAATATTCCAAAAACCCTCTGAGGGAG TTCCTGCACAAGGGACTGCATGTGTCCCTCTCCACTGATGACCCCATGCAGTTCCACTAC ACCAAGGAAGCACTGATGGAAGAATATGCGATTGCAGCTCAAGTGTGGAAGCTGAGCACA TGTGACCTGTGCGAGATCGCCAGGAACAGCGTGCTGCAGAGCGGCCTCTCGCATCAGGAA AAGCAAAAATTTCTGGGACAAAATTATTATAAAGAAGGCCCTGAAGGAAATGATATTCGA AAGACAAATGTGGCTCAGATCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAACCCGCCCTACAGCTACTACCTGTATTACATGTACGCCAACATCATGGTGCTCAAC AACCTGCGCAGGGAACGGGGCCTGAGCACGTTCCTGTTCCGGCCTCACTGCGGGGAGGCC GGCTCCATTACCCACCTGGTGTCTGCTTTCCTGACCGCCGACAATATTTCCCATGGGCTG CTCCTCAAGAAGAGTCCGGTGCTGCAGTATCTCTACTACCTTGCTCAGATCCCCATCGCC ATGTCTCCTCTTAGCAACAACAGCCTGTTCCTCGAATATTCCAAAAACCCTCTGAGGGAG TTCCTGCACAAGGGACTGCATGTGTCCCTCTCCACTGATGACCCCATGCAGTTCCACTAC ACCAAGGAAGCACTGATGGAAGAATATGCGATTGCAGCTCAAGTGTGGAAGCTGAGCACA TGTGACCTGTGCGAGATCGCCAGGAACAGCGTGCTGCAGAGCGGCCTCTCGCATCAGGAA AAGCAAAAATTTCTGGGACAAAATTATTATAAAGAAGGCCCTGAAGGAAATGATATTCGA AAGACAAATGTGGCTCAGATCCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 68-478, + strand, RNAz p=0.892344 | |
| 74-192, + strand, RNAz p=0.870468 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 68-478, + strand, RNAz p=0.892344 | |
| 74-192, + strand, RNAz p=0.870468 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 68-192, gnl|bosTau2|chr15 (27773851-27773727) | |
| 68-192, gnl|canFam2|chr21 (36838988-36839106) | |
| 68-192, gnl|danRer3|chr18 (15823132-15823035) | |
| 68-192, gnl|dasNov1|scaffold_90168 (3665-3784) | |
| 68-192, gnl|echTel1|scaffold_312429 (105674-105561) | |
| 68-192, gnl|fr1|chrUn (37073845-37073731) | |
| 68-192, gnl|galGal2|chr5 (6445681-6445587) | |
| 68-192, gnl|hg17|chr11 (10479565-10479685) | |
| 68-192, gnl|Hg17|chr11 (10479589-10479713) | |
| 68-192, gnl|loxAfr1|scaffold_4051 (23093-22991) | |
| 68-192, gnl|mm7|chr7 (106721209-106721327) | |
| 68-192, gnl|Mm7|chr7 (106721231-106721355) | |
| 68-192, gnl|monDom2|scaffold_10 (60724790-60724912) | |
| 68-192, gnl|oryCun1|scaffold_209280 (34370-34470) | |
| 68-192, gnl|panTro1|chr9 (10712350-10712470) | |
| 68-192, gnl|rheMac2|chr14 (61450002-61449883) | |
| 68-192, gnl|rn3|chr1 (168672469-168672587) | |
| 68-192, gnl|tetNig1|chr5 (6318613-6318512) | |
| 68-192, gnl|xenTro1|scaffold_41 (2289506-2289603) | |
| 365-478, gnl|bosTau2|chr15 (27770666-27770553) | |
| 365-478, gnl|canFam2|chr21 (36841906-36842025) | |
| 365-478, gnl|danRer3|chr18 (15819400-15819281) | |
| 365-478, gnl|dasNov1|scaffold_90168 (6032-6151) | |
| 365-478, gnl|echTel1|scaffold_312429 (102269-102151) | |
| 365-478, gnl|fr1|chrUn (37072839-37072720) | |
| 365-478, gnl|galGal2|chr5 (6443244-6443126) | |
| 365-478, gnl|hg17|chr11 (10482668-10482787) | |
| 365-478, gnl|Hg17|chr11 (10482670-10482783) | |
| 365-478, gnl|loxAfr1|scaffold_13222 (42819-42926) | |
| 365-478, gnl|mm7|chr7 (106725063-106725181) | |
| 365-478, gnl|Mm7|chr7 (106725065-106725178) | |
| 365-478, gnl|monDom2|scaffold_10 (60727765-60727887) | |
| 365-478, gnl|oryCun1|scaffold_178054 (53966-54085) | |
| 365-478, gnl|panTro1|chr9 (10715436-10715555) | |
| 365-478, gnl|rheMac2|chr14 (61446827-61446708) | |
| 365-478, gnl|rn3|chr1 (168676309-168676428) | |
| 365-478, gnl|tetNig1|chr5 (6317676-6317557) | |
| 365-478, gnl|xenTro1|scaffold_41 (2290736-2290853) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-192, gnl|bosTau2|chr15 (27773851-27773727) | |
| 68-192, gnl|canFam2|chr21 (36838988-36839106) | |
| 68-192, gnl|danRer3|chr18 (15823132-15823035) | |
| 68-192, gnl|dasNov1|scaffold_90168 (3665-3784) | |
| 68-192, gnl|echTel1|scaffold_312429 (105674-105561) | |
| 68-192, gnl|fr1|chrUn (37073845-37073731) | |
| 68-192, gnl|galGal2|chr5 (6445681-6445587) | |
| 68-192, gnl|hg17|chr11 (10479565-10479685) | |
| 68-192, gnl|Hg17|chr11 (10479589-10479713) | |
| 68-192, gnl|loxAfr1|scaffold_4051 (23093-22991) | |
| 68-192, gnl|mm7|chr7 (106721209-106721327) | |
| 68-192, gnl|Mm7|chr7 (106721231-106721355) | |
| 68-192, gnl|monDom2|scaffold_10 (60724790-60724912) | |
| 68-192, gnl|oryCun1|scaffold_209280 (34370-34470) | |
| 68-192, gnl|panTro1|chr9 (10712350-10712470) | |
| 68-192, gnl|rheMac2|chr14 (61450002-61449883) | |
| 68-192, gnl|rn3|chr1 (168672469-168672587) | |
| 68-192, gnl|tetNig1|chr5 (6318613-6318512) | |
| 68-192, gnl|xenTro1|scaffold_41 (2289506-2289603) | |
| 365-478, gnl|bosTau2|chr15 (27770666-27770553) | |
| 365-478, gnl|canFam2|chr21 (36841906-36842025) | |
| 365-478, gnl|danRer3|chr18 (15819400-15819281) | |
| 365-478, gnl|dasNov1|scaffold_90168 (6032-6151) | |
| 365-478, gnl|echTel1|scaffold_312429 (102269-102151) | |
| 365-478, gnl|fr1|chrUn (37072839-37072720) | |
| 365-478, gnl|galGal2|chr5 (6443244-6443126) | |
| 365-478, gnl|hg17|chr11 (10482668-10482787) | |
| 365-478, gnl|Hg17|chr11 (10482670-10482783) | |
| 365-478, gnl|loxAfr1|scaffold_13222 (42819-42926) | |
| 365-478, gnl|mm7|chr7 (106725063-106725181) | |
| 365-478, gnl|Mm7|chr7 (106725065-106725178) | |
| 365-478, gnl|monDom2|scaffold_10 (60727765-60727887) | |
| 365-478, gnl|oryCun1|scaffold_178054 (53966-54085) | |
| 365-478, gnl|panTro1|chr9 (10715436-10715555) | |
| 365-478, gnl|rheMac2|chr14 (61446827-61446708) | |
| 365-478, gnl|rn3|chr1 (168676309-168676428) | |
| 365-478, gnl|tetNig1|chr5 (6317676-6317557) | |
| 365-478, gnl|xenTro1|scaffold_41 (2290736-2290853) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| nmm (0.132802) |