Ss1.1-rspl27_k5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCGCAGCCACTGCTCAGTGTAGAATACCTCAAAGCCTTTCAGGCTGTCCAGAATCTTC CAACCAAGAAGCAGCAGCTACAGGCCTTGAACCTTCTTGTCATCCTCCTGCCTGATGCAA ACAGAGACACACTCAAGGCCCTGCTTGAATTTCTCCAAAGAGTCGTCGACAATAGAGAGA AAAATAAGATGACAATCATGAATGTAGCCATGGTCATGGCCCCGAATCTCTTCATGTCCC ACACATTGGGTTTGAAGTCCAGTGAGCAGCGAGAATTTGCAATGGCAGCTGGGATCGCTA ATATCATGCACTTATTGATTAGGTATCAAAAACTTCTATGGACAATTCCCAAGTTCATTG TCAACCAAGTGAGGAAACAAAACACCGAAAATCACAGAAAAGATAAAAAAGCCATGAAGA AGTTGCTGAAGAAGATGGCTTATGACCGAGAAAAGTATGAAAAGCCAGATAAGAGCGTAA ATGACGCTGACGTTCCTCAGGGAGTGATTCGAGTGCAAGCTCCCCATCTTTCGAAAGTTT CCATGGCAATACAGCTAACTGAAGAACTCAAAGCCAGTGATGTACTTGCCAGGTTTCTCA GCCAAGAAAGTAGTGGGGTTGCCCAGACTCTCAAGAATGGGGAAGTTTCTTTGTATGAAA TTGGAGGAAATATCGGAGAACGCTGCCTCGATGACGACACTTATATGAAGGACTTATATC AGCTGAACCCAAATGCTGAGTGGGTTATAAAGTCCAAACCATCATAGAAGACTTAAATTG CAGATAACCACAAGGACTTCCATAGGAATACTTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCGCAGCCACTGCTCAGTGTAGAATACCTCAAAGCCTTTCAGGCTGTCCAGAATCTTC CAACCAAGAAGCAGCAGCTACAGGCCTTGAACCTTCTTGTCATCCTCCTGCCTGATGCAA ACAGAGACACACTCAAGGCCCTGCTTGAATTTCTCCAAAGAGTCGTCGACAATAGAGAGA AAAATAAGATGACAATCATGAATGTAGCCATGGTCATGGCCCCGAATCTCTTCATGTCCC ACACATTGGGTTTGAAGTCCAGTGAGCAGCGAGAATTTGCAATGGCAGCTGGGATCGCTA ATATCATGCACTTATTGATTAGGTATCAAAAACTTCTATGGACAATTCCCAAGTTCATTG TCAACCAAGTGAGGAAACAAAACACCGAAAATCACAGAAAAGATAAAAAAGCCATGAAGA AGTTGCTGAAGAAGATGGCTTATGACCGAGAAAAGTATGAAAAGCCAGATAAGAGCGTAA ATGACGCTGACGTTCCTCAGGGAGTGATTCGAGTGCAAGCTCCCCATCTTTCGAAAGTTT CCATGGCAATACAGCTAACTGAAGAACTCAAAGCCAGTGATGTACTTGCCAGGTTTCTCA GCCAAGAAAGTAGTGGGGTTGCCCAGACTCTCAAGAATGGGGAAGTTTCTTTGTATGAAA TTGGAGGAAATATCGGAGAACGCTGCCTCGATGACGACACTTATATGAAGGACTTATATC AGCTGAACCCAAATGCTGAGTGGGTTATAAAGTCCAAACCATCATAGAAGACTTAAATTG CAGATAACCACAAGGACTTCCATAGGAATACTTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 345-463, + strand, RNAz p=0.55672 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-463, + strand, RNAz p=0.55672 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 136-344, gnl|bosTau2|chr9 (38064125-38063917) | |
| 136-344, gnl|canFam2|chr1 (71218298-71218532) | |
| 136-344, gnl|danRer3|chr20 (2428837-2429051) | |
| 136-344, gnl|dasNov1|scaffold_555 (30537-30771) | |
| 136-344, gnl|echTel1|scaffold_314284 (25308-25562) | |
| 136-344, gnl|fr1|chrUn (207574847-207574613) | |
| 136-344, gnl|galGal2|chr3 (56410621-56410394) | |
| 136-344, gnl|hg17|chr6 (129963468-129963702) | |
| 136-344, gnl|Hg17|chr6 (129963688-129963480) | |
| 136-344, gnl|loxAfr1|scaffold_9853 (41539-41306) | |
| 136-344, gnl|mm7|chr10 (26640181-26639953) | |
| 136-344, gnl|Mm7|chr10 (26639965-26640173) | |
| 136-344, gnl|monDom2|scaffold_0 (82956957-82956723) | |
| 136-344, gnl|panTro1|chr5 (132516660-132516894) | |
| 136-344, gnl|rheMac2|chr4 (134302651-134302417) | |
| 136-344, gnl|rn3|chr1 (19001814-19002048) | |
| 136-344, gnl|tetNig1|chr14 (6593745-6593532) | |
| 136-344, gnl|xenTro1|scaffold_943 (179395-179635) | |
| 345-484, gnl|bosTau2|chr9 (38063071-38062932) | |
| 345-484, gnl|Hg17|chr6 (129962194-129962055) | |
| 345-484, gnl|Mm7|chr10 (26641918-26642057) | |
| 486-616, gnl|bosTau2|chr9 (38051036-38050905) | |
| 486-616, gnl|canFam2|chr1 (71204790-71204926) | |
| 486-616, gnl|dasNov1|scaffold_555 (11481-11619) | |
| 486-616, gnl|echTel1|scaffold_314284 (11108-11245) | |
| 486-616, gnl|galGal2|chrUn (74303984-74304120) | |
| 486-616, gnl|hg17|chr6 (129946802-129946938) | |
| 486-616, gnl|Hg17|chr6 (129946950-129946819) | |
| 486-616, gnl|loxAfr1|scaffold_9853 (56985-56858) | |
| 486-616, gnl|mm7|chr10 (26664938-26664807) | |
| 486-616, gnl|Mm7|chr10 (26664793-26664924) | |
| 486-616, gnl|monDom2|scaffold_0 (82971654-82971517) | |
| 486-616, gnl|panTro1|chr5 (132499998-132500134) | |
| 486-616, gnl|rheMac2|chr4 (134319222-134319086) | |
| 486-616, gnl|rn3|chr1 (18979205-18979336) | |
| 675-816, gnl|bosTau2|chr9 (38045741-38045596) | |
| 675-816, gnl|canFam2|chr1 (71199447-71199849) | |
| 675-816, gnl|dasNov1|scaffold_555 (6843-7252) | |
| 675-816, gnl|echTel1|scaffold_314284 (5662-6118) | |
| 675-816, gnl|hg17|chr6 (129941134-129941554) | |
| 675-816, gnl|Hg17|chr6 (129941443-129941299) | |
| 675-816, gnl|loxAfr1|scaffold_4864 (381-790) | |
| 675-816, gnl|mm7|chr10 (26669473-26669103) | |
| 675-816, gnl|Mm7|chr10 (26669190-26669316) | |
| 675-816, gnl|monDom2|scaffold_0 (82982118-82981630) | |
| 675-816, gnl|oryCun1|scaffold_208094 (51779-51379) | |
| 675-816, gnl|panTro1|chr5 (132494332-132494752) | |
| 675-816, gnl|rheMac2|chr4 (134325311-134324891) | |
| 675-816, gnl|rn3|chr1 (18967924-18968295) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-344, gnl|bosTau2|chr9 (38064125-38063917) | |
| 136-344, gnl|canFam2|chr1 (71218298-71218532) | |
| 136-344, gnl|danRer3|chr20 (2428837-2429051) | |
| 136-344, gnl|dasNov1|scaffold_555 (30537-30771) | |
| 136-344, gnl|echTel1|scaffold_314284 (25308-25562) | |
| 136-344, gnl|fr1|chrUn (207574847-207574613) | |
| 136-344, gnl|galGal2|chr3 (56410621-56410394) | |
| 136-344, gnl|hg17|chr6 (129963468-129963702) | |
| 136-344, gnl|Hg17|chr6 (129963688-129963480) | |
| 136-344, gnl|loxAfr1|scaffold_9853 (41539-41306) | |
| 136-344, gnl|mm7|chr10 (26640181-26639953) | |
| 136-344, gnl|Mm7|chr10 (26639965-26640173) | |
| 136-344, gnl|monDom2|scaffold_0 (82956957-82956723) | |
| 136-344, gnl|panTro1|chr5 (132516660-132516894) | |
| 136-344, gnl|rheMac2|chr4 (134302651-134302417) | |
| 136-344, gnl|rn3|chr1 (19001814-19002048) | |
| 136-344, gnl|tetNig1|chr14 (6593745-6593532) | |
| 136-344, gnl|xenTro1|scaffold_943 (179395-179635) | |
| 345-484, gnl|bosTau2|chr9 (38063071-38062932) | |
| 345-484, gnl|Hg17|chr6 (129962194-129962055) | |
| 345-484, gnl|Mm7|chr10 (26641918-26642057) | |
| 486-616, gnl|bosTau2|chr9 (38051036-38050905) | |
| 486-616, gnl|canFam2|chr1 (71204790-71204926) | |
| 486-616, gnl|dasNov1|scaffold_555 (11481-11619) | |
| 486-616, gnl|echTel1|scaffold_314284 (11108-11245) | |
| 486-616, gnl|galGal2|chrUn (74303984-74304120) | |
| 486-616, gnl|hg17|chr6 (129946802-129946938) | |
| 486-616, gnl|Hg17|chr6 (129946950-129946819) | |
| 486-616, gnl|loxAfr1|scaffold_9853 (56985-56858) | |
| 486-616, gnl|mm7|chr10 (26664938-26664807) | |
| 486-616, gnl|Mm7|chr10 (26664793-26664924) | |
| 486-616, gnl|monDom2|scaffold_0 (82971654-82971517) | |
| 486-616, gnl|panTro1|chr5 (132499998-132500134) | |
| 486-616, gnl|rheMac2|chr4 (134319222-134319086) | |
| 486-616, gnl|rn3|chr1 (18979205-18979336) | |
| 675-816, gnl|bosTau2|chr9 (38045741-38045596) | |
| 675-816, gnl|canFam2|chr1 (71199447-71199849) | |
| 675-816, gnl|dasNov1|scaffold_555 (6843-7252) | |
| 675-816, gnl|echTel1|scaffold_314284 (5662-6118) | |
| 675-816, gnl|hg17|chr6 (129941134-129941554) | |
| 675-816, gnl|Hg17|chr6 (129941443-129941299) | |
| 675-816, gnl|loxAfr1|scaffold_4864 (381-790) | |
| 675-816, gnl|mm7|chr10 (26669473-26669103) | |
| 675-816, gnl|Mm7|chr10 (26669190-26669316) | |
| 675-816, gnl|monDom2|scaffold_0 (82982118-82981630) | |
| 675-816, gnl|oryCun1|scaffold_208094 (51779-51379) | |
| 675-816, gnl|panTro1|chr5 (132494332-132494752) | |
| 675-816, gnl|rheMac2|chr4 (134325311-134324891) | |
| 675-816, gnl|rn3|chr1 (18967924-18968295) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) |