Non-Coding RNA Search

Ss1.1-rspl28_h4.5

Sequence:


               
               AAGAACATAGACCAGGATTCCCACATAGCTGTGTAGGTCTTGTGGAATAAGGAATTCTTG
GGCTCTGTGCCCAACATTCTGGGTCTGGGGAGAGACCTGAGTATCTTGCAGCAGTCCCTA
CAAGCAGTCCTGGGCGGGGCTCAGCCAGATTGGGAACCAATGAGGTCAGTGATCAGAGAG
CGCCCAGGGTGGGGAGGGGTCTTCAATCCGCAATTACGTGTTGTGTGTTCCTGGGAAGAA
AAGGGCAAGACATCTGCTGGGACATAGCTGTTGTTTCTCTATCTGGGGTGTGTAGCCAGG
TGGAAGACTGGAGATGTGCTTATCAGCCCAGCATAATGAAAATCAATGCATCCTTGCTCT
CTGAAACTACTCCCTGCATTGAGTTCTCACCCACTTCTTGGTGCAGTCAATGGAATCCAA
GTTTTTCTAATTGAAATGTACACACATACACACGTACACTTGGGATCTCATTTTATTGTG
GAGAGTGCATGAAGTGACAGCCAATAATGTCATTTTAAATTAGTTTTCTTACAGGAGCAC
TTCTTTGCTGCTGGGCACAGTTGCTAATGTTTTTACCACCAATACCCTCGATGCTGGACA
CTGGGTCCTGTGGCCAGGACTGCTATCAGTGTGGCTCTTGGCAAGTGGATGTCCCTACTG
CTGCTCACTACCTTTGCCGGAATGCATTGTGCACACACCCAGCATCTCTGTGTCATCATC
TCCTGAGTCAGGATTCAGCATGTGGTCATTTGACTGAAGGAACCTGTGTCTACTTGCATG
TTTGGAGGCATAACTCTCACAGACTTCAGACAATATTACAAAGCTACAGTCATCAAGACA
GTGTGGTAGTGGTACCAAAACAGAAATACCAACCAATGGAACAGAATAGAGAGCCCAGAA
ATAAAGCCGGATGCCTACAGTCAATTAATCTTTGACAAAAAAGGCAAGAAAATAAAATGG
GAAAAAGACAGTCTCTTTAGCAGGTGGTGCTGGGAAAACTGGACCACTGCATGTAAGTCA
ATGAAACTAGAACACACCCTCACATCATGCACAAAATAAACTCAAAATGACTTAAAGCCT
TAAACATAATGATGATCATTGTTAAACTATAAATGTAATAAAATTCATTGTTTAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAACATAGACCAGGATTCCCACATAGCTGTGTAGGTCTTGTGGAATAAGGAATTCTTG
GGCTCTGTGCCCAACATTCTGGGTCTGGGGAGAGACCTGAGTATCTTGCAGCAGTCCCTA
CAAGCAGTCCTGGGCGGGGCTCAGCCAGATTGGGAACCAATGAGGTCAGTGATCAGAGAG
CGCCCAGGGTGGGGAGGGGTCTTCAATCCGCAATTACGTGTTGTGTGTTCCTGGGAAGAA
AAGGGCAAGACATCTGCTGGGACATAGCTGTTGTTTCTCTATCTGGGGTGTGTAGCCAGG
TGGAAGACTGGAGATGTGCTTATCAGCCCAGCATAATGAAAATCAATGCATCCTTGCTCT
CTGAAACTACTCCCTGCATTGAGTTCTCACCCACTTCTTGGTGCAGTCAATGGAATCCAA
GTTTTTCTAATTGAAATGTACACACATACACACGTACACTTGGGATCTCATTTTATTGTG
GAGAGTGCATGAAGTGACAGCCAATAATGTCATTTTAAATTAGTTTTCTTACAGGAGCAC
TTCTTTGCTGCTGGGCACAGTTGCTAATGTTTTTACCACCAATACCCTCGATGCTGGACA
CTGGGTCCTGTGGCCAGGACTGCTATCAGTGTGGCTCTTGGCAAGTGGATGTCCCTACTG
CTGCTCACTACCTTTGCCGGAATGCATTGTGCACACACCCAGCATCTCTGTGTCATCATC
TCCTGAGTCAGGATTCAGCATGTGGTCATTTGACTGAAGGAACCTGTGTCTACTTGCATG
TTTGGAGGCATAACTCTCACAGACTTCAGACAATATTACAAAGCTACAGTCATCAAGACA
GTGTGGTAGTGGTACCAAAACAGAAATACCAACCAATGGAACAGAATAGAGAGCCCAGAA
ATAAAGCCGGATGCCTACAGTCAATTAATCTTTGACAAAAAAGGCAAGAAAATAAAATGG
GAAAAAGACAGTCTCTTTAGCAGGTGGTGCTGGGAAAACTGGACCACTGCATGTAAGTCA
ATGAAACTAGAACACACCCTCACATCATGCACAAAATAAACTCAAAATGACTTAAAGCCT
TAAACATAATGATGATCATTGTTAAACTATAAATGTAATAAAATTCATTGTTTAAATAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               283-1089, gnl|bosTau2|chr1 (68146537-68145730)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-1089, gnl|bosTau2|chr1 (68146537-68145730)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               duo (0.345602)
               

               
               isp (0.300752)
               

               
               pan (0.23596)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               isp (0.300752)
               

               
               pan (0.23596)
               

               
               sin (0.174948)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	duo (0.345602)
	isp (0.300752)
	pan (0.23596)
	sin (0.174948)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)
	bla (0.124347)