Non-Coding RNA Search

Ss1.1-rspl28_m15.5

Sequence:


               
               AAAGTCAATCAGAAAAGGGATACTGGAGCTTCTTCATGTATGAAACAGCATATTAAACTG
GAGACAGTGATGAATCAGCTACAAAGGTAATATTGTATTAAAATCATGTTTAAGATAGCT
GCTTTTATGTGTATTTTATAATGCATGCTTTTGTAAAAACAATGCTGGCTGATGATAGTC
TCAGAGAGAAAATGTTCATCTGTGCAGAAGATACATTTTCTTCCATTAATTATTCTGGAG
AAAAATTCACAGGTGTTATATATGGTATTTTCCAAAAGGACTATTAATGGAACCTTTTGA
GATGAATTAGTATAAGAATATTTTTTAAATAGGCTCACTGTCAAATTGATTGCAACTTTT
TTTTTTTTTTCTTCAAATACAAGACTGGAAAAAGTGCTAAGTCATTAGCATCTCCTTACA
AATATTTTTCATGGTCACATTCATTAACTGTTACTGTATTTCTGAATTTTTGCAAAAATG
TATTTTATCATAATAGAATGGAATTATTTTAAAGAGTTTGAAAAACTGACATAGTCAATT
CAGAAAATGAACTGAGGTCTGAATAAGGTCATTGCATTTAAAACATATGTATACTTAAGG
GAGGTGTGTGACTTTCATTGTATATAGGTCTTATAATTCATAAACATATCCTGTATCAGA
ATAAAAATGTGTGTTATATATTTGAAATCATGCATGGTAAGGAGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTCAATCAGAAAAGGGATACTGGAGCTTCTTCATGTATGAAACAGCATATTAAACTG
GAGACAGTGATGAATCAGCTACAAAGGTAATATTGTATTAAAATCATGTTTAAGATAGCT
GCTTTTATGTGTATTTTATAATGCATGCTTTTGTAAAAACAATGCTGGCTGATGATAGTC
TCAGAGAGAAAATGTTCATCTGTGCAGAAGATACATTTTCTTCCATTAATTATTCTGGAG
AAAAATTCACAGGTGTTATATATGGTATTTTCCAAAAGGACTATTAATGGAACCTTTTGA
GATGAATTAGTATAAGAATATTTTTTAAATAGGCTCACTGTCAAATTGATTGCAACTTTT
TTTTTTTTTTCTTCAAATACAAGACTGGAAAAAGTGCTAAGTCATTAGCATCTCCTTACA
AATATTTTTCATGGTCACATTCATTAACTGTTACTGTATTTCTGAATTTTTGCAAAAATG
TATTTTATCATAATAGAATGGAATTATTTTAAAGAGTTTGAAAAACTGACATAGTCAATT
CAGAAAATGAACTGAGGTCTGAATAAGGTCATTGCATTTAAAACATATGTATACTTAAGG
GAGGTGTGTGACTTTCATTGTATATAGGTCTTATAATTCATAAACATATCCTGTATCAGA
ATAAAAATGTGTGTTATATATTTGAAATCATGCATGGTAAGGAGTGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               189-305, + strand, RNAz p=0.902319

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-305, + strand, RNAz p=0.902319

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001755, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001755, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-708, gnl|bosTau2|chr18 (28299154-28299846)
               

               
               2-708, gnl|Hg17|chr16 (65691119-65691816)
               

               
               2-708, gnl|Mm7|chr8 (103815381-103816065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-708, gnl|bosTau2|chr18 (28299154-28299846)
               

               
               2-708, gnl|Hg17|chr16 (65691119-65691816)
               

               
               2-708, gnl|Mm7|chr8 (103815381-103816065)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	2-708, gnl\|bosTau2\|chr18 (28299154-28299846)
	2-708, gnl\|Hg17\|chr16 (65691119-65691816)
	2-708, gnl\|Mm7\|chr8 (103815381-103816065)