Non-Coding RNA Search

Ss1.1-rspl28_m5.5

Sequence:


               
               GCCCATCACCGGCCGCTGCATCAGTGCCATGGGCTACAAGTTCCATCCTGAGCACTTCGT
ATGTGATTTCTGCCTGATGCAGCTGTCGAAGGGCATCTTCAGGGAGCAGAATGACAAGAC
CTATTGTCAGCCCTGCTTCAATAAGCTCTTCACACAGTAATCTCAGCTGAACCCAGATTT
GCTAGAAAATGTAAACCAAGAGAGGAAAAAGTATATTTGTAGTTACTGATCTTCTGCTCA
ATAGGCTTATAGAGAAAGCAAAGGTGATGAACAAAGAAGGTAACATCTCAATATTACATG
GCTGGGCTTATAGTCTTAAGGTTTGATTTTTTGTCTTTTTTGTTTGTTTGTTTGTATTTT
AAATCAGGTACTTGAATTTAGATCTGGCATATGCTGTCTAGTGCCTCTGCAGATGTGTTT
TCTCCATGCACAAATTCCTTCCACCACGGGTATACTCGGATTTCTTCATTTTCAACCCTA
TGATGGCCTTACTGGTACCTTCTCTTTTTTGGTCCTCATAAATGGGTCTTTTAAGCTACT
CACATTTCCCTGTGACTCACTTTCCCACAGTCACTGCCATGGATTTTATTCTGGCTGTTA
GAAATCATGACACGACTCTTAAGCTCCTTGCATTTCCCTTCAGGGTGTTTCTCTTTTTTC
AAGAGAAAGTAGATTTTAACTTTGAATACTGACATCATTGATAAATAAAGTAGCTTGCAG
TTTTGATGATGTAATGTCACATTAGTTTAGTAAACTTTCTGCTTCCCATGTTAGGTGCTA
GGCACAATGTACAATTAAATTTGTATCTTACCTCTTGTTTATTTCTATCCAATAGGCACT
TTTGTTTAAATCAAAGGAAATTAGAAGAGGGGGTTCCTCGTCACTAACTTTTTTCTTAAT
TTGGGCTCCTGACTTTATTTTTTGCACTTAGATGACAGATTCAATGACAAATCTTCTTAA
AATTGTTTTCATCATTTTGCTTATCTGTGGGGAAAAAACAATTTCCACTGGGCACTTGCA
AATTCATATTTGCATGTATAAGCTTATCTCTGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCATCACCGGCCGCTGCATCAGTGCCATGGGCTACAAGTTCCATCCTGAGCACTTCGT
ATGTGATTTCTGCCTGATGCAGCTGTCGAAGGGCATCTTCAGGGAGCAGAATGACAAGAC
CTATTGTCAGCCCTGCTTCAATAAGCTCTTCACACAGTAATCTCAGCTGAACCCAGATTT
GCTAGAAAATGTAAACCAAGAGAGGAAAAAGTATATTTGTAGTTACTGATCTTCTGCTCA
ATAGGCTTATAGAGAAAGCAAAGGTGATGAACAAAGAAGGTAACATCTCAATATTACATG
GCTGGGCTTATAGTCTTAAGGTTTGATTTTTTGTCTTTTTTGTTTGTTTGTTTGTATTTT
AAATCAGGTACTTGAATTTAGATCTGGCATATGCTGTCTAGTGCCTCTGCAGATGTGTTT
TCTCCATGCACAAATTCCTTCCACCACGGGTATACTCGGATTTCTTCATTTTCAACCCTA
TGATGGCCTTACTGGTACCTTCTCTTTTTTGGTCCTCATAAATGGGTCTTTTAAGCTACT
CACATTTCCCTGTGACTCACTTTCCCACAGTCACTGCCATGGATTTTATTCTGGCTGTTA
GAAATCATGACACGACTCTTAAGCTCCTTGCATTTCCCTTCAGGGTGTTTCTCTTTTTTC
AAGAGAAAGTAGATTTTAACTTTGAATACTGACATCATTGATAAATAAAGTAGCTTGCAG
TTTTGATGATGTAATGTCACATTAGTTTAGTAAACTTTCTGCTTCCCATGTTAGGTGCTA
GGCACAATGTACAATTAAATTTGTATCTTACCTCTTGTTTATTTCTATCCAATAGGCACT
TTTGTTTAAATCAAAGGAAATTAGAAGAGGGGGTTCCTCGTCACTAACTTTTTTCTTAAT
TTGGGCTCCTGACTTTATTTTTTGCACTTAGATGACAGATTCAATGACAAATCTTCTTAA
AATTGTTTTCATCATTTTGCTTATCTGTGGGGAAAAAACAATTTCCACTGGGCACTTGCA
AATTCATATTTGCATGTATAAGCTTATCTCTGAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-184, + strand, RNAz p=0.998269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-184, + strand, RNAz p=0.998269

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004811, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004811, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-591, gnl|bosTau2|chr15 (53266608-53267195)
               

               
               1-591, gnl|canFam2|chr18 (40910696-40910206)
               

               
               1-591, gnl|dasNov1|scaffold_17334 (11343-10811)
               

               
               1-591, gnl|echTel1|scaffold_189693 (5181-5696)
               

               
               1-591, gnl|hg17|chr11 (58051004-58051496)
               

               
               1-591, gnl|Hg17|chr11 (58051662-58051066)
               

               
               1-591, gnl|mm7|chr19 (12513841-12513461)
               

               
               1-591, gnl|oryCun1|scaffold_189517 (54004-53549)
               

               
               1-591, gnl|panTro1|chr9 (58990088-58990580)
               

               
               1-591, gnl|rheMac2|chr14 (15018935-15018453)
               

               
               1-591, gnl|rn3|chr1 (216078619-216078224)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-591, gnl|bosTau2|chr15 (53266608-53267195)
               

               
               1-591, gnl|canFam2|chr18 (40910696-40910206)
               

               
               1-591, gnl|dasNov1|scaffold_17334 (11343-10811)
               

               
               1-591, gnl|echTel1|scaffold_189693 (5181-5696)
               

               
               1-591, gnl|hg17|chr11 (58051004-58051496)
               

               
               1-591, gnl|Hg17|chr11 (58051662-58051066)
               

               
               1-591, gnl|mm7|chr19 (12513841-12513461)
               

               
               1-591, gnl|oryCun1|scaffold_189517 (54004-53549)
               

               
               1-591, gnl|panTro1|chr9 (58990088-58990580)
               

               
               1-591, gnl|rheMac2|chr14 (15018935-15018453)
               

               
               1-591, gnl|rn3|chr1 (216078619-216078224)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               spl (0.286369)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-591, gnl\|bosTau2\|chr15 (53266608-53267195)
	1-591, gnl\|canFam2\|chr18 (40910696-40910206)
	1-591, gnl\|dasNov1\|scaffold_17334 (11343-10811)
	1-591, gnl\|echTel1\|scaffold_189693 (5181-5696)
	1-591, gnl\|hg17\|chr11 (58051004-58051496)
	1-591, gnl\|Hg17\|chr11 (58051662-58051066)
	1-591, gnl\|mm7\|chr19 (12513841-12513461)
	1-591, gnl\|oryCun1\|scaffold_189517 (54004-53549)
	1-591, gnl\|panTro1\|chr9 (58990088-58990580)
	1-591, gnl\|rheMac2\|chr14 (15018935-15018453)
	1-591, gnl\|rn3\|chr1 (216078619-216078224)

	spl (0.286369)
	mga (0.160205)
	kid (0.129735)
	cbl (0.114797)
	spc (0.113366)