Non-Coding RNA Search

Ss1.1-rspl30_b21.5

Sequence:


               
               GACCAGAAGTGGCACGATAAACAGTACAAGAAAGCCCATTTGGGCACAGCCCTGAAGGCC
AACCCTTTCGGAGGCGCTTCTCATGCCAAGGGAATTGTCCTTGAAAAAGTGTAAGTACAT
TGTTGCGTCCTTCAGGATTTGAGTAGGGTAACTCGAGAAAAATGCCCTTAAGGTTGGCTG
TAAACCCTTGGTCTTTATGTAGCCGCAGTTGTTGGAAAGTTAAATAACCTCCAGAGGTTT
CCAAACTTTAACATTGTTTCGAAGGAATTGTGGCATTGGAGTGAAAAAAGTAACAGTAAT
GAAATAATGGACATTAAAAGAGCTTATATGTGTGGAAACTGTTCTAAGAAAGTCGCACCC
ATCTATTTCATCTTTGCAGTCAATCACGTCTTTGCTCTTGAGAAAACAAATGTAGAGTAT
GCTGCATCTATTTACCAGTACTCAATTGTTTTTTGATTTTATAAAATGGCAATTGTAATT
TTGTGGGTGTCTCAAGTTTAGTGGCAGTGAGGATCTGAATCCAGGCTTTATATTTATAGC
TCTAGTTCTTCCTTCATATTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCAGAAGTGGCACGATAAACAGTACAAGAAAGCCCATTTGGGCACAGCCCTGAAGGCC
AACCCTTTCGGAGGCGCTTCTCATGCCAAGGGAATTGTCCTTGAAAAAGTGTAAGTACAT
TGTTGCGTCCTTCAGGATTTGAGTAGGGTAACTCGAGAAAAATGCCCTTAAGGTTGGCTG
TAAACCCTTGGTCTTTATGTAGCCGCAGTTGTTGGAAAGTTAAATAACCTCCAGAGGTTT
CCAAACTTTAACATTGTTTCGAAGGAATTGTGGCATTGGAGTGAAAAAAGTAACAGTAAT
GAAATAATGGACATTAAAAGAGCTTATATGTGTGGAAACTGTTCTAAGAAAGTCGCACCC
ATCTATTTCATCTTTGCAGTCAATCACGTCTTTGCTCTTGAGAAAACAAATGTAGAGTAT
GCTGCATCTATTTACCAGTACTCAATTGTTTTTTGATTTTATAAAATGGCAATTGTAATT
TTGTGGGTGTCTCAAGTTTAGTGGCAGTGAGGATCTGAATCCAGGCTTTATATTTATAGC
TCTAGTTCTTCCTTCATATTTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-110, + strand, RNAz p=0.6142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, + strand, RNAz p=0.6142

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-110, gnl|bosTau2|chr24 (38697792-38697901)
               

               
               1-110, gnl|canFam2|chr24 (26151734-26151605)
               

               
               1-110, gnl|danRer3|chrNA (103154439-103154311)
               

               
               1-110, gnl|dasNov1|scaffold_100140 (5545-5674)
               

               
               1-110, gnl|echTel1|scaffold_254366 (4217-4088)
               

               
               1-110, gnl|fr1|chrUn (288448598-288448726)
               

               
               1-110, gnl|hg17|chr4 (67125616-67125742)
               

               
               1-110, gnl|Hg17|chr8 (98946512-98946621)
               

               
               1-110, gnl|loxAfr1|scaffold_1952 (97607-97482)
               

               
               1-110, gnl|mm7|chr3 (37525561-37525690)
               

               
               1-110, gnl|Mm7|chr3 (37525575-37525684)
               

               
               1-110, gnl|monDom2|scaffold_9 (52233049-52233178)
               

               
               1-110, gnl|oryCun1|scaffold_210432 (28387-28516)
               

               
               1-110, gnl|panTro1|chr3 (79372721-79372595)
               

               
               1-110, gnl|rheMac2|chr5 (62941897-62941771)
               

               
               1-110, gnl|rn3|chr8 (114686068-114685939)
               

               
               1-110, gnl|tetNig1|chrUn_random (5840810-5840939)
               

               
               1-110, gnl|xenTro1|scaffold_162 (1375134-1375005)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr24 (38697792-38697901)
               

               
               1-110, gnl|canFam2|chr24 (26151734-26151605)
               

               
               1-110, gnl|danRer3|chrNA (103154439-103154311)
               

               
               1-110, gnl|dasNov1|scaffold_100140 (5545-5674)
               

               
               1-110, gnl|echTel1|scaffold_254366 (4217-4088)
               

               
               1-110, gnl|fr1|chrUn (288448598-288448726)
               

               
               1-110, gnl|hg17|chr4 (67125616-67125742)
               

               
               1-110, gnl|Hg17|chr8 (98946512-98946621)
               

               
               1-110, gnl|loxAfr1|scaffold_1952 (97607-97482)
               

               
               1-110, gnl|mm7|chr3 (37525561-37525690)
               

               
               1-110, gnl|Mm7|chr3 (37525575-37525684)
               

               
               1-110, gnl|monDom2|scaffold_9 (52233049-52233178)
               

               
               1-110, gnl|oryCun1|scaffold_210432 (28387-28516)
               

               
               1-110, gnl|panTro1|chr3 (79372721-79372595)
               

               
               1-110, gnl|rheMac2|chr5 (62941897-62941771)
               

               
               1-110, gnl|rn3|chr8 (114686068-114685939)
               

               
               1-110, gnl|tetNig1|chrUn_random (5840810-5840939)
               

               
               1-110, gnl|xenTro1|scaffold_162 (1375134-1375005)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-110, gnl\|bosTau2\|chr24 (38697792-38697901)
	1-110, gnl\|canFam2\|chr24 (26151734-26151605)
	1-110, gnl\|danRer3\|chrNA (103154439-103154311)
	1-110, gnl\|dasNov1\|scaffold_100140 (5545-5674)
	1-110, gnl\|echTel1\|scaffold_254366 (4217-4088)
	1-110, gnl\|fr1\|chrUn (288448598-288448726)
	1-110, gnl\|hg17\|chr4 (67125616-67125742)
	1-110, gnl\|Hg17\|chr8 (98946512-98946621)
	1-110, gnl\|loxAfr1\|scaffold_1952 (97607-97482)
	1-110, gnl\|mm7\|chr3 (37525561-37525690)
	1-110, gnl\|Mm7\|chr3 (37525575-37525684)
	1-110, gnl\|monDom2\|scaffold_9 (52233049-52233178)
	1-110, gnl\|oryCun1\|scaffold_210432 (28387-28516)
	1-110, gnl\|panTro1\|chr3 (79372721-79372595)
	1-110, gnl\|rheMac2\|chr5 (62941897-62941771)
	1-110, gnl\|rn3\|chr8 (114686068-114685939)
	1-110, gnl\|tetNig1\|chrUn_random (5840810-5840939)
	1-110, gnl\|xenTro1\|scaffold_162 (1375134-1375005)