Non-Coding RNA Search

Ss1.1-rspl30_d24.5

Sequence:


               
               GAGGAAGCTACAGTACTTTCCAGATGGGAAAAAGTGAACACTACAGTTGAGCAAAACCGT
GCTAGGTTGGATGTTGACCGGGAACCTATTAGCCCTTTGCTGGGAAGCCTTCATCCTTCA
GCTTCCCTGGGGTAGGGAAGGCTTCCCACATTATGCAATAATAAAATAAGCATCTGGGTC
TTCACAGCTGTCAGTTGCTCTTTCAGCTCTAGAATCCATCTTTGGGCCAGAAGCCTGGTC
TGGGCCTAGAATGATACTGGCCCTTGAGATGCTAGAGTTGGCTGCACTCTCTCCTTACCT
GCAGACTATGCACAGTGCCTGGGGCGGAAGGAGGAGAGGTGGTGCGCTTTGCCCTGCTGA
GCCTCCCCAGCAGGAACAGTAGTAATAAATGCACTTTTCACACTAAGGTTTCTTTATTAG
TTCTCCTGTTGAGCCTAGATCCTTCCCCGGTAGATTGCAAACTCAAAGTCTGTGTGATTT
CCCCAAGCCATTCTACTGCAAATGCCCAGCAGTGAAGATGGCCTCAAATTGGGTTCCTGT
CTGCAGTGTGTGTGGCGGCAGCCCATGTGCCTTTACCTATTGTCAGACTTGCAAACATTT
ATTTCTGTCTTTATGACTCTCATGGGGATTGAGGTTCTTTAGAGAGAGAGAGTGCAAGCG
CAAGCGAGCTGATGACACAGTGGTTTTACACCCACTCCCTGGACAGGGAGCTTGCATGTA
GTTGTGAGCTGTGAGTGGTTGGTGCATCGCTGGTGT------------GGTTCATCCCTC
ATTTGCTTGACACTCGCATTCAAGAGAAGCTTGTATTGGGGAAGATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAAGCTACAGTACTTTCCAGATGGGAAAAAGTGAACACTACAGTTGAGCAAAACCGT
GCTAGGTTGGATGTTGACCGGGAACCTATTAGCCCTTTGCTGGGAAGCCTTCATCCTTCA
GCTTCCCTGGGGTAGGGAAGGCTTCCCACATTATGCAATAATAAAATAAGCATCTGGGTC
TTCACAGCTGTCAGTTGCTCTTTCAGCTCTAGAATCCATCTTTGGGCCAGAAGCCTGGTC
TGGGCCTAGAATGATACTGGCCCTTGAGATGCTAGAGTTGGCTGCACTCTCTCCTTACCT
GCAGACTATGCACAGTGCCTGGGGCGGAAGGAGGAGAGGTGGTGCGCTTTGCCCTGCTGA
GCCTCCCCAGCAGGAACAGTAGTAATAAATGCACTTTTCACACTAAGGTTTCTTTATTAG
TTCTCCTGTTGAGCCTAGATCCTTCCCCGGTAGATTGCAAACTCAAAGTCTGTGTGATTT
CCCCAAGCCATTCTACTGCAAATGCCCAGCAGTGAAGATGGCCTCAAATTGGGTTCCTGT
CTGCAGTGTGTGTGGCGGCAGCCCATGTGCCTTTACCTATTGTCAGACTTGCAAACATTT
ATTTCTGTCTTTATGACTCTCATGGGGATTGAGGTTCTTTAGAGAGAGAGAGTGCAAGCG
CAAGCGAGCTGATGACACAGTGGTTTTACACCCACTCCCTGGACAGGGAGCTTGCATGTA
GTTGTGAGCTGTGAGTGGTTGGTGCATCGCTGGTGT------------GGTTCATCCCTC
ATTTGCTTGACACTCGCATTCAAGAGAAGCTTGTATTGGGGAAGATAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-397, + strand, RNAz p=0.974136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-397, + strand, RNAz p=0.974136

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               276-362, + strand, RNAmicro p=0.982883

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-362, + strand, RNAmicro p=0.982883

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-816, gnl|bosTau2|chr18 (32347191-32346352)
               

               
               4-816, gnl|Hg17|chr16 (70447212-70448025)
               

               
               4-816, gnl|Mm7|chr8 (108328080-108327296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-816, gnl|bosTau2|chr18 (32347191-32346352)
               

               
               4-816, gnl|Hg17|chr16 (70447212-70448025)
               

               
               4-816, gnl|Mm7|chr8 (108328080-108327296)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ldo (0.0970026)

	4-816, gnl\|bosTau2\|chr18 (32347191-32346352)
	4-816, gnl\|Hg17\|chr16 (70447212-70448025)
	4-816, gnl\|Mm7\|chr8 (108328080-108327296)