Ss1.1-rspl30_e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAAAGCAGAGGCAGCGGGGGAAGATGGCGGCCGCCGTTCCACAGCGGGCTTGGACCGTG GAGCAGCTGCGCAGCGAGCAGCTACCCAAGAAGGACATTATCAAGTTTCTGCAGGATCAC GGTTCAGATTCGTTTCTTGCAGAGCATAAGTTATTAGGAAACATTAAAAATGTGGCCAAG ACAGCTAACAAGGACCATTTGGTGACAGCTTATAACCATCTTTTTGAAAGCAAGCGTTTC AAGGGTACTGAAAGTATAACTAAAGTGTCTGAACAGGTGAAAAATGTGAAGCTTAATGAA GATAAACCCAAAGAAACGAAGTCTGAAGAGACTCTGGATGAGGGTCCACCAAAATATACA AAATCTGTTCTTAAAAAAGGAGATAAAACCAACTTTCCCAAAAAGGGAGATGTTGTTCAC TGCTGGTATACAGGAACACTACAAGACGGGACTGTCTTTGATACTAACATTCAAACAAGT TCAAAGAAGAAGAAAAGTGCCAAGCCTTTAAGTTTTAAGGTTGGAATAGGCAAAGTTATC AGAGGATGGGATGAAGCACTCCTAACTATGAGTAAAGGAGAAAAGGCTCGACTGGAGATT GAACCAGAATGGGCTTATGGAAAGAAAGGACAGCCTGATGCCAAAATTCCACCAAATGCA AAACTTATTTTTGAAGTGGAATTAGTGGATATTGACTGAGACAGTAAAGAACAGCAACAA TAAAACTGACCTTGAGAAAATTTATGTATCTTATTACAGCTGGTTACTATAAGGAAAGAG TCAACTGGAAAATTCAAGAAGTTACAGCTTGTTTACTTGATGCTCAACCTTTAAGAAATG TAATCTGTTATAAATCCTTTAAGTTTAAAATATTTTACTACAGCTGTGTAAAATATTGCC TAAAGAGAACCGGTTTTCCTTTTACCCCGTATGGTAAACTAAAAGGCTCAATAAAAATTT ATTCAATCTCTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAAAGCAGAGGCAGCGGGGGAAGATGGCGGCCGCCGTTCCACAGCGGGCTTGGACCGTG GAGCAGCTGCGCAGCGAGCAGCTACCCAAGAAGGACATTATCAAGTTTCTGCAGGATCAC GGTTCAGATTCGTTTCTTGCAGAGCATAAGTTATTAGGAAACATTAAAAATGTGGCCAAG ACAGCTAACAAGGACCATTTGGTGACAGCTTATAACCATCTTTTTGAAAGCAAGCGTTTC AAGGGTACTGAAAGTATAACTAAAGTGTCTGAACAGGTGAAAAATGTGAAGCTTAATGAA GATAAACCCAAAGAAACGAAGTCTGAAGAGACTCTGGATGAGGGTCCACCAAAATATACA AAATCTGTTCTTAAAAAAGGAGATAAAACCAACTTTCCCAAAAAGGGAGATGTTGTTCAC TGCTGGTATACAGGAACACTACAAGACGGGACTGTCTTTGATACTAACATTCAAACAAGT TCAAAGAAGAAGAAAAGTGCCAAGCCTTTAAGTTTTAAGGTTGGAATAGGCAAAGTTATC AGAGGATGGGATGAAGCACTCCTAACTATGAGTAAAGGAGAAAAGGCTCGACTGGAGATT GAACCAGAATGGGCTTATGGAAAGAAAGGACAGCCTGATGCCAAAATTCCACCAAATGCA AAACTTATTTTTGAAGTGGAATTAGTGGATATTGACTGAGACAGTAAAGAACAGCAACAA TAAAACTGACCTTGAGAAAATTTATGTATCTTATTACAGCTGGTTACTATAAGGAAAGAG TCAACTGGAAAATTCAAGAAGTTACAGCTTGTTTACTTGATGCTCAACCTTTAAGAAATG TAATCTGTTATAAATCCTTTAAGTTTAAAATATTTTACTACAGCTGTGTAAAATATTGCC TAAAGAGAACCGGTTTTCCTTTTACCCCGTATGGTAAACTAAAAGGCTCAATAAAAATTT ATTCAATCTCTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 363-480, + strand, RNAz p=0.531981 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 363-480, + strand, RNAz p=0.531981 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr21 (37228160-37228029) | |
| 1-132, gnl|canFam2|chr15 (25078028-25077904) | |
| 1-132, gnl|canFam2|chr8 (25566176-25566311) | |
| 1-132, gnl|dasNov1|scaffold_137032 (1062-1192) | |
| 1-132, gnl|dasNov1|scaffold_21951 (12209-12074) | |
| 1-132, gnl|echTel1|scaffold_72098 (6209-6334) | |
| 1-132, gnl|echTel1|scaffold_72098 (6209-6331) | |
| 1-132, gnl|fr1|chrUn (51712762-51712652) | |
| 1-132, gnl|hg17|chr1 (38215571-38215697) | |
| 1-132, gnl|hg17|chr14 (44673300-44673435) | |
| 1-132, gnl|Hg17|chr14 (44673433-44673302) | |
| 1-132, gnl|loxAfr1|scaffold_4857 (16498-16372) | |
| 1-132, gnl|loxAfr1|scaffold_4857 (16499-16377) | |
| 1-132, gnl|mm7|chr12 (63012903-63013038) | |
| 1-132, gnl|Mm7|chr12 (63013036-63012905) | |
| 1-132, gnl|mm7|chr15 (7168778-7168687) | |
| 1-132, gnl|monDom2|scaffold_10 (53078973-53079099) | |
| 1-132, gnl|monDom2|scaffold_8 (66639527-66639391) | |
| 1-132, gnl|oryCun1|scaffold_188616 (31090-30955) | |
| 1-132, gnl|oryCun1|scaffold_188616 (31087-30964) | |
| 1-132, gnl|panTro1|chr1 (39064120-39064246) | |
| 1-132, gnl|panTro1|chr15 (43930389-43930524) | |
| 1-132, gnl|rheMac2|chr1 (40960149-40960274) | |
| 1-132, gnl|rheMac2|chr7 (108305889-108306024) | |
| 1-132, gnl|rn3|chr15 (107274991-107275113) | |
| 1-132, gnl|rn3|chr6 (86425912-86426047) | |
| 1-132, gnl|tetNig1|chr14 (7084001-7083891) | |
| 1-132, gnl|tetNig1|chr14 (7083987-7083892) | |
| 341-480, gnl|bosTau2|chr21 (37222184-37222045) | |
| 341-480, gnl|canFam2|chr14 (9287977-9288069) | |
| 341-480, gnl|canFam2|chr8 (25560088-25560241) | |
| 341-480, gnl|danRer3|chr17 (46752369-46752221) | |
| 341-480, gnl|dasNov1|scaffold_137032 (714-789) | |
| 341-480, gnl|dasNov1|scaffold_52443 (953-800) | |
| 341-480, gnl|echTel1|scaffold_224955 (14622-14469) | |
| 341-480, gnl|echTel1|scaffold_274911 (612-537) | |
| 341-480, gnl|fr1|chrUn (51713629-51713476) | |
| 341-480, gnl|fr1|chrUn (51713623-51713530) | |
| 341-480, gnl|galGal2|chr5 (55462530-55462378) | |
| 341-480, gnl|hg17|chr1 (232775532-232775645) | |
| 341-480, gnl|hg17|chr14 (44660431-44660584) | |
| 341-480, gnl|Hg17|chr14 (44660575-44660439) | |
| 341-480, gnl|loxAfr1|scaffold_14634 (7592-7439) | |
| 341-480, gnl|loxAfr1|scaffold_4857 (16846-16772) | |
| 341-480, gnl|mm7|chr12 (63005725-63005878) | |
| 341-480, gnl|Mm7|chr12 (63005869-63005730) | |
| 341-480, gnl|mm7|chr15 (7169121-7169041) | |
| 341-480, gnl|monDom2|scaffold_10 (53078624-53078704) | |
| 341-480, gnl|monDom2|scaffold_8 (66646729-66646576) | |
| 341-480, gnl|oryCun1|scaffold_188616 (39355-39200) | |
| 341-480, gnl|oryCun1|scaffold_188616 (39349-39261) | |
| 341-480, gnl|panTro1|chr1 (216608308-216608421) | |
| 341-480, gnl|panTro1|chr15 (43917530-43917683) | |
| 341-480, gnl|rheMac2|chr1 (220720472-220720359) | |
| 341-480, gnl|rheMac2|chr7 (108292983-108293136) | |
| 341-480, gnl|rn3|chr2 (56546099-56546019) | |
| 341-480, gnl|rn3|chr6 (86419187-86419340) | |
| 341-480, gnl|tetNig1|chr14 (7084803-7084661) | |
| 341-480, gnl|tetNig1|chr14 (7084800-7084707) | |
| 341-480, gnl|xenTro1|scaffold_1227 (61836-61986) | |
| 642-971, gnl|bosTau2|chr21 (37218384-37218051) | |
| 642-971, gnl|Hg17|chr14 (44655208-44654858) | |
| 642-971, gnl|Mm7|chr12 (63001833-63001525) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr21 (37228160-37228029) | |
| 1-132, gnl|canFam2|chr15 (25078028-25077904) | |
| 1-132, gnl|canFam2|chr8 (25566176-25566311) | |
| 1-132, gnl|dasNov1|scaffold_137032 (1062-1192) | |
| 1-132, gnl|dasNov1|scaffold_21951 (12209-12074) | |
| 1-132, gnl|echTel1|scaffold_72098 (6209-6334) | |
| 1-132, gnl|echTel1|scaffold_72098 (6209-6331) | |
| 1-132, gnl|fr1|chrUn (51712762-51712652) | |
| 1-132, gnl|hg17|chr1 (38215571-38215697) | |
| 1-132, gnl|hg17|chr14 (44673300-44673435) | |
| 1-132, gnl|Hg17|chr14 (44673433-44673302) | |
| 1-132, gnl|loxAfr1|scaffold_4857 (16498-16372) | |
| 1-132, gnl|loxAfr1|scaffold_4857 (16499-16377) | |
| 1-132, gnl|mm7|chr12 (63012903-63013038) | |
| 1-132, gnl|Mm7|chr12 (63013036-63012905) | |
| 1-132, gnl|mm7|chr15 (7168778-7168687) | |
| 1-132, gnl|monDom2|scaffold_10 (53078973-53079099) | |
| 1-132, gnl|monDom2|scaffold_8 (66639527-66639391) | |
| 1-132, gnl|oryCun1|scaffold_188616 (31090-30955) | |
| 1-132, gnl|oryCun1|scaffold_188616 (31087-30964) | |
| 1-132, gnl|panTro1|chr1 (39064120-39064246) | |
| 1-132, gnl|panTro1|chr15 (43930389-43930524) | |
| 1-132, gnl|rheMac2|chr1 (40960149-40960274) | |
| 1-132, gnl|rheMac2|chr7 (108305889-108306024) | |
| 1-132, gnl|rn3|chr15 (107274991-107275113) | |
| 1-132, gnl|rn3|chr6 (86425912-86426047) | |
| 1-132, gnl|tetNig1|chr14 (7084001-7083891) | |
| 1-132, gnl|tetNig1|chr14 (7083987-7083892) | |
| 341-480, gnl|bosTau2|chr21 (37222184-37222045) | |
| 341-480, gnl|canFam2|chr14 (9287977-9288069) | |
| 341-480, gnl|canFam2|chr8 (25560088-25560241) | |
| 341-480, gnl|danRer3|chr17 (46752369-46752221) | |
| 341-480, gnl|dasNov1|scaffold_137032 (714-789) | |
| 341-480, gnl|dasNov1|scaffold_52443 (953-800) | |
| 341-480, gnl|echTel1|scaffold_224955 (14622-14469) | |
| 341-480, gnl|echTel1|scaffold_274911 (612-537) | |
| 341-480, gnl|fr1|chrUn (51713629-51713476) | |
| 341-480, gnl|fr1|chrUn (51713623-51713530) | |
| 341-480, gnl|galGal2|chr5 (55462530-55462378) | |
| 341-480, gnl|hg17|chr1 (232775532-232775645) | |
| 341-480, gnl|hg17|chr14 (44660431-44660584) | |
| 341-480, gnl|Hg17|chr14 (44660575-44660439) | |
| 341-480, gnl|loxAfr1|scaffold_14634 (7592-7439) | |
| 341-480, gnl|loxAfr1|scaffold_4857 (16846-16772) | |
| 341-480, gnl|mm7|chr12 (63005725-63005878) | |
| 341-480, gnl|Mm7|chr12 (63005869-63005730) | |
| 341-480, gnl|mm7|chr15 (7169121-7169041) | |
| 341-480, gnl|monDom2|scaffold_10 (53078624-53078704) | |
| 341-480, gnl|monDom2|scaffold_8 (66646729-66646576) | |
| 341-480, gnl|oryCun1|scaffold_188616 (39355-39200) | |
| 341-480, gnl|oryCun1|scaffold_188616 (39349-39261) | |
| 341-480, gnl|panTro1|chr1 (216608308-216608421) | |
| 341-480, gnl|panTro1|chr15 (43917530-43917683) | |
| 341-480, gnl|rheMac2|chr1 (220720472-220720359) | |
| 341-480, gnl|rheMac2|chr7 (108292983-108293136) | |
| 341-480, gnl|rn3|chr2 (56546099-56546019) | |
| 341-480, gnl|rn3|chr6 (86419187-86419340) | |
| 341-480, gnl|tetNig1|chr14 (7084803-7084661) | |
| 341-480, gnl|tetNig1|chr14 (7084800-7084707) | |
| 341-480, gnl|xenTro1|scaffold_1227 (61836-61986) | |
| 642-971, gnl|bosTau2|chr21 (37218384-37218051) | |
| 642-971, gnl|Hg17|chr14 (44655208-44654858) | |
| 642-971, gnl|Mm7|chr12 (63001833-63001525) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| isp (4.21053) | |
| bfe (3.8963) | |
| vin (3.65813) | |
| tbr (2.77521) | |
| fco (1.8865) | |
| ldo (1.55204) | |
| ste (1.35208) | |
| aor (1.17165) | |
| spc (1.13366) | |
| ssp (0.948638) | |
| ret (0.7724) | |
| spl (0.715922) | |
| mgp (0.692042) | |
| nms (0.641574) | |
| thg (0.633955) | |
| tra (0.61546) | |
| sme (0.610874) | |
| nep (0.551775) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| sin (0.524843) | |
| cbe (0.478469) | |
| ski (0.440205) | |
| liv (0.438853) | |
| hea (0.408998) | |
| kid (0.389206) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| cje (0.330469) | |
| lun (0.300978) | |
| fat (0.294855) | |
| lin (0.291206) | |
| csk (0.281492) | |
| che (0.272628) | |
| fce (0.271592) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (4.21053) | |
| bfe (3.8963) | |
| vin (3.65813) | |
| tbr (2.77521) | |
| fco (1.8865) | |
| ldo (1.55204) | |
| ste (1.35208) | |
| aor (1.17165) | |
| spc (1.13366) | |
| ssp (0.948638) | |
| ret (0.7724) | |
| spl (0.715922) | |
| mgp (0.692042) | |
| nms (0.641574) | |
| thg (0.633955) | |
| tra (0.61546) | |
| sme (0.610874) | |
| nep (0.551775) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| sin (0.524843) | |
| cbe (0.478469) | |
| ski (0.440205) | |
| liv (0.438853) | |
| hea (0.408998) | |
| kid (0.389206) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| cje (0.330469) | |
| lun (0.300978) | |
| fat (0.294855) | |
| lin (0.291206) | |
| csk (0.281492) | |
| che (0.272628) | |
| fce (0.271592) | |
| ova (0.258264) | |
| sug (0.254582) | |
| ece (0.229305) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| mga (0.160205) | |
| eli (0.151814) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| eje (0.0988338) |