Non-Coding RNA Search

Ss1.1-rspl30_j17.5

Sequence:


               
               CGCCGCCACCCGCCTCCCACGATGGCTCTGAAGAGAATCCACAAGGAATTGAACGACCTG
GCACGGGACCCCCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTGG
CAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACA
ATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTCGCATTTACAACAAGAATT
TATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGG
TCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCC
AATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAG
TACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTATTG
GATAACCTCTACAAATAAAGATAGGGGAACTCTGAAAGAGAAAGTCCTTTTGATTTCCAT
TTGACTGCTTTCTATGAGCCCACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACA
GCAGTGCTGCGTGTTGTACATACTTGGAACCACAAACTAGAAATACTGTACTTCTGTACC
AACATTGCCTCCTAGCAGAGAAGTGTGTGTGTGACAAGCCAGTTCTCCAGGCATAACCTA
GGTGTGAGACTAAAAGCTTTCCTTATTGACTTAATTTGGATAACGGCAAGGTGAGGGTTG
GTGGGTATGGTGTGTGCTTGGATGGAGAAGAAAAGCTCCACTGACCTGTAGGAGATTGTT
TTTTAAGTGAAATCCTATTAAACTCAAAACAGTTATGAAAAGCAAGGTGAAGAACACAAA
GCTGTTTCTGTATTCCTTTTATTCCGAAGGACCTACGTACGTCTTAGGTGACAGTTATGA
CCAACCAGCTTAAACTCTACCCACGTCCTGTATTTGAAGGTCTAAGTTTAACTGGTCAAC
ATTGAAATGGATCGGAGCTATTAGTACAGAAAGTGTGATGGGCTTTGTTCCCAGCTCTTT
TACATCGCCCCCCCTTCACCCTTCCTCCCTCAGCCCCTCTTTCTCTCGTCCATATTCTTT
GGTTTGTATGTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATTTTTCTTATGTTTT
TAACTGCTTAGGTCTATCTGGATGTAAGGGTGAAAATTCACTTGATGGAAATACTTGTGT
ATATTTAAAGACCCAACTGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATCTGTGT
AATAAACTGATTACTACAGTCATTACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCCACCCGCCTCCCACGATGGCTCTGAAGAGAATCCACAAGGAATTGAACGACCTG
GCACGGGACCCCCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTGG
CAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACA
ATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTCGCATTTACAACAAGAATT
TATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGG
TCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCC
AATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAG
TACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTATTG
GATAACCTCTACAAATAAAGATAGGGGAACTCTGAAAGAGAAAGTCCTTTTGATTTCCAT
TTGACTGCTTTCTATGAGCCCACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACA
GCAGTGCTGCGTGTTGTACATACTTGGAACCACAAACTAGAAATACTGTACTTCTGTACC
AACATTGCCTCCTAGCAGAGAAGTGTGTGTGTGACAAGCCAGTTCTCCAGGCATAACCTA
GGTGTGAGACTAAAAGCTTTCCTTATTGACTTAATTTGGATAACGGCAAGGTGAGGGTTG
GTGGGTATGGTGTGTGCTTGGATGGAGAAGAAAAGCTCCACTGACCTGTAGGAGATTGTT
TTTTAAGTGAAATCCTATTAAACTCAAAACAGTTATGAAAAGCAAGGTGAAGAACACAAA
GCTGTTTCTGTATTCCTTTTATTCCGAAGGACCTACGTACGTCTTAGGTGACAGTTATGA
CCAACCAGCTTAAACTCTACCCACGTCCTGTATTTGAAGGTCTAAGTTTAACTGGTCAAC
ATTGAAATGGATCGGAGCTATTAGTACAGAAAGTGTGATGGGCTTTGTTCCCAGCTCTTT
TACATCGCCCCCCCTTCACCCTTCCTCCCTCAGCCCCTCTTTCTCTCGTCCATATTCTTT
GGTTTGTATGTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATTTTTCTTATGTTTT
TAACTGCTTAGGTCTATCTGGATGTAAGGGTGAAAATTCACTTGATGGAAATACTTGTGT
ATATTTAAAGACCCAACTGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATCTGTGT
AATAAACTGATTACTACAGTCATTACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62859579|ref|NP_001016064.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62859579|ref|NP_001016064.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               19-467, gnl|bosTau2|chr3 (16369142-16369590)
               

               
               19-467, gnl|Hg17|chr20 (5221480-5221032)
               

               
               19-467, gnl|Mm7|chr3 (135249528-135259586)
               


               
               67-466, gnl|bosTau2|chr14 (47054209-47054611)
               

               
               67-466, gnl|Hg17|chr20 (5221432-5221033)
               

               
               67-466, gnl|Mm7|chrX (69881426-69881027)
               


               
               735-1163, gnl|bosTau2|chr5 (54436015-54436443)
               

               
               735-1163, gnl|Hg17|chr12 (16509315-16510211)
               

               
               735-1163, gnl|Mm7|chr18 (36181947-36182383)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-467, gnl|bosTau2|chr3 (16369142-16369590)
               

               
               19-467, gnl|Hg17|chr20 (5221480-5221032)
               

               
               19-467, gnl|Mm7|chr3 (135249528-135259586)
               


               
               67-466, gnl|bosTau2|chr14 (47054209-47054611)
               

               
               67-466, gnl|Hg17|chr20 (5221432-5221033)
               

               
               67-466, gnl|Mm7|chrX (69881426-69881027)
               


               
               735-1163, gnl|bosTau2|chr5 (54436015-54436443)
               

               
               735-1163, gnl|Hg17|chr12 (16509315-16510211)
               

               
               735-1163, gnl|Mm7|chr18 (36181947-36182383)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               isp (0.902256)
               

               
               tes (0.623441)
               

               
               aor (0.585823)
               

               
               cte (0.58548)
               

               
               spl (0.572738)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               bfe (0.449573)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.902256)
               

               
               tes (0.623441)
               

               
               aor (0.585823)
               

               
               cte (0.58548)
               

               
               spl (0.572738)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               bfe (0.449573)
               

               
               ssp (0.406559)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               gul (0.355177)
               

               
               fhi (0.339155)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               hlv (0.278513)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               spc (0.226732)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	19-467, gnl\|bosTau2\|chr3 (16369142-16369590)
	19-467, gnl\|Hg17\|chr20 (5221480-5221032)
	19-467, gnl\|Mm7\|chr3 (135249528-135259586)

	67-466, gnl\|bosTau2\|chr14 (47054209-47054611)
	67-466, gnl\|Hg17\|chr20 (5221432-5221033)
	67-466, gnl\|Mm7\|chrX (69881426-69881027)

	735-1163, gnl\|bosTau2\|chr5 (54436015-54436443)
	735-1163, gnl\|Hg17\|chr12 (16509315-16510211)
	735-1163, gnl\|Mm7\|chr18 (36181947-36182383)

	isp (0.902256)
	tes (0.623441)
	aor (0.585823)
	cte (0.58548)
	spl (0.572738)
	pro (0.512033)
	tbr (0.462535)
	bfe (0.449573)
	ssp (0.406559)
	fcc (0.39557)
	ldo (0.38801)
	cmu (0.372787)
	pgl (0.35545)
	gul (0.355177)
	fhi (0.339155)
	sme (0.305437)
	ski (0.29347)
	hlv (0.278513)
	ova (0.258264)
	sug (0.254582)
	bla (0.248694)
	ebs (0.236602)
	cbl (0.229595)
	spc (0.226732)
	nbm (0.198649)
	nlu (0.191681)
	mgm (0.180343)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	fco (0.157208)
	cag (0.151194)
	lun (0.150489)
	liv (0.146284)
	hyp (0.142837)
	csk (0.140746)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	ese (0.126502)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)