Non-Coding RNA Search

Ss1.1-rspl31_g10.5

Sequence:


               
               GCGCCGCCGCCTCCTCCTCCATGGCTGTTTACCCGGCTGCATTGTGGGAGTTTGACCTCC
GCCGCCGCCAACCGCCGCCTCAGCTTGCGCCGCCGCCGCCGCGCACGCCATGGGAGCCGT
GACTGACGACGAAGTCATAAGGAAGCGTCTCCTAATTGATGGAGATGGTGCTGGAGATGA
TCGGAGAATTAATCTGCTAGTGAAAAGTTTCATTAAATGGTGCAACTCTGGATCCCAGGA
AGAAGGATACAGCCAATACCAACGTATGCTGAGCACACTGTCCCAATGCGAATTTTCAAT
GGGTAAAACTTTGCTGGTATATGACATGAATCTCAGAGAAATGGAAAATTATGAAAAAAT
TTACAAAGAAATAGAATGTAGTATTGCTGGAGCACATGAAAAAATTGCTGAGTGCAAAAA
GCAAATTCTTCAGGCAAAACGAATACGAAAAAATCGCCAAGAATATGATGCTTTGGCAAA
AGTGATCCAGCATCATCCAGACAGGCATGAGACATTAAAGGAACTAGAGGCTCTGGGAAA
AGAATTAGAGCATCTTTCACATATTAAAGAAAGTGTTGAAGATAAGCTGGAATTAAGAAG
GAAACAGTTTCACGTTCTTCTGAGTACTATCCATGAACTTCAGCAAACACTGGAAAATGA
TGAAAAGCTCTCGGAAGTAGAAGAAGCTCAAGAAACAAGCATGGAAACAGATCCTAAACC
ATAGACCAGCTAATCACTCACCATTCCCAAGAATACTGAAGTAGCAACGTGAGCTTACTG
TGTTTAGCATTTGTTGTACTCTTGAGATATTTAAAGTTTTGGCAGTGAACTACTTGGCTT
TTAAATATTAATGCACGGTTCATTCACATTTTTTCACACTAAGGAAGATGCCTTCATCAT
AGATTTGTTTTTATTGAAATGCCTTTTTTATTCTTAAAGTTGAAAGGAAGCAACATCCAA
AAATGTTTAATAAAATGTTTTCCAGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCCGCCTCCTCCTCCATGGCTGTTTACCCGGCTGCATTGTGGGAGTTTGACCTCC
GCCGCCGCCAACCGCCGCCTCAGCTTGCGCCGCCGCCGCCGCGCACGCCATGGGAGCCGT
GACTGACGACGAAGTCATAAGGAAGCGTCTCCTAATTGATGGAGATGGTGCTGGAGATGA
TCGGAGAATTAATCTGCTAGTGAAAAGTTTCATTAAATGGTGCAACTCTGGATCCCAGGA
AGAAGGATACAGCCAATACCAACGTATGCTGAGCACACTGTCCCAATGCGAATTTTCAAT
GGGTAAAACTTTGCTGGTATATGACATGAATCTCAGAGAAATGGAAAATTATGAAAAAAT
TTACAAAGAAATAGAATGTAGTATTGCTGGAGCACATGAAAAAATTGCTGAGTGCAAAAA
GCAAATTCTTCAGGCAAAACGAATACGAAAAAATCGCCAAGAATATGATGCTTTGGCAAA
AGTGATCCAGCATCATCCAGACAGGCATGAGACATTAAAGGAACTAGAGGCTCTGGGAAA
AGAATTAGAGCATCTTTCACATATTAAAGAAAGTGTTGAAGATAAGCTGGAATTAAGAAG
GAAACAGTTTCACGTTCTTCTGAGTACTATCCATGAACTTCAGCAAACACTGGAAAATGA
TGAAAAGCTCTCGGAAGTAGAAGAAGCTCAAGAAACAAGCATGGAAACAGATCCTAAACC
ATAGACCAGCTAATCACTCACCATTCCCAAGAATACTGAAGTAGCAACGTGAGCTTACTG
TGTTTAGCATTTGTTGTACTCTTGAGATATTTAAAGTTTTGGCAGTGAACTACTTGGCTT
TTAAATATTAATGCACGGTTCATTCACATTTTTTCACACTAAGGAAGATGCCTTCATCAT
AGATTTGTTTTTATTGAAATGCCTTTTTTATTCTTAAAGTTGAAAGGAAGCAACATCCAA
AAATGTTTAATAAAATGTTTTCCAGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|40787669|gb|AAH65012.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40787669|gb|AAH65012.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               129-1003, gnl|bosTau2|chr17 (12922706-12921832)
               

               
               129-1003, gnl|Hg17|chr3 (63800489-63794642)
               

               
               129-1003, gnl|Mm7|chr14 (11773536-11767895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-1003, gnl|bosTau2|chr17 (12922706-12921832)
               

               
               129-1003, gnl|Hg17|chr3 (63800489-63794642)
               

               
               129-1003, gnl|Mm7|chr14 (11773536-11767895)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               ret (1.931)
               

               
               lin (1.01922)
               

               
               mgp (0.922722)
               

               
               kid (0.908147)
               

               
               bfe (0.749288)
               

               
               gul (0.710353)
               

               
               tbr (0.616713)
               

               
               isp (0.601504)
               

               
               ski (0.586941)
               

               
               aor (0.585823)
               

               
               sag (0.548145)
               

               
               rec (0.519211)
               

               
               ldo (0.485013)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.931)
               

               
               lin (1.01922)
               

               
               mgp (0.922722)
               

               
               kid (0.908147)
               

               
               bfe (0.749288)
               

               
               gul (0.710353)
               

               
               tbr (0.616713)
               

               
               isp (0.601504)
               

               
               ski (0.586941)
               

               
               aor (0.585823)
               

               
               sag (0.548145)
               

               
               rec (0.519211)
               

               
               ldo (0.485013)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	129-1003, gnl\|bosTau2\|chr17 (12922706-12921832)
	129-1003, gnl\|Hg17\|chr3 (63800489-63794642)
	129-1003, gnl\|Mm7\|chr14 (11773536-11767895)

	ret (1.931)
	lin (1.01922)
	mgp (0.922722)
	kid (0.908147)
	bfe (0.749288)
	gul (0.710353)
	tbr (0.616713)
	isp (0.601504)
	ski (0.586941)
	aor (0.585823)
	sag (0.548145)
	rec (0.519211)
	ldo (0.485013)
	fat (0.442282)
	liv (0.438853)
	spl (0.429553)
	tes (0.415628)
	hea (0.408998)
	sug (0.381874)
	tra (0.369276)
	mgm (0.360685)
	sin (0.349895)
	spc (0.340097)
	vin (0.332557)
	fco (0.314416)
	sme (0.305437)
	cte (0.29274)
	cst (0.280073)
	ssp (0.271039)
	ste (0.270416)
	pla (0.267344)
	ova (0.258264)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	fcc (0.197785)
	nlu (0.191681)
	ill (0.175593)
	cut (0.169924)
	nco (0.161734)
	ctl (0.153069)
	hyp (0.142837)
	hlv (0.139256)
	cov (0.132153)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)