Non-Coding RNA Search

Ss1.1-rspl31_m23.5

Sequence:


               
               AGTATATCACCCGCTTCTGCAACCCAAGCCGGTTGATGACTGGAGAGGATGGCTACTATT
TCACCAACCTGTGCTGTGCTGTGGCTTTCATTGAGAAATTAGATGCTCAGTCTTTGAATT
TAAGTCAGGAAGATTTCGATCGATACATGTCTGGCCAGACTTCTCCCAGGAAGCAAGAAT
CGGAGAACTGGTCTCCTGATGCTTGCTTGGGTGTTAAGCAGATGTATAAGAATTTGGATC
TCCTGTCTCAATTGAATGAACGGCAGGAAAGGATTATGAACGAAGCCAAGAAGCTTGAGA
AAGACCTAATAGATTGGACAGATGGAATCGCAAAAGAGGTTCAAGACATTGTTGAGAAAT
ATCCACTTGAAATTAAGCCCCCAAATCAGTCGTTAGCAGCTATTGACTCTGAAAATGTTG
AAAATGATAAACTTCCTCCACCGCTGCAACCTCAAGTTTATGCAGGATGATAAAAAATTG
ACGTAGATAGTATTTATTTGAGCCTAAATTGTAGCCAGCCCTTATTGCCACAGTCCACCA
ATTGGGATCTAGAGTATAACTTAATTGCTTATAAATATCAGAGCATTTTTAAAGGTACAG
TTTATGGGGATTGTTTTGTTCATTTTGTTTTTGTTTTTCCTGTCAGGGGAGGCTTAGGAA
ATAATAAAGTACTATTTATTTGGGTTACTGAAATAGATTCATTTAAGGCTTGTGTGAAAA
TTTTGTCTATAAATCTATTTTTTCTCCATGATTTTCCTATGTGCTTCCTCTGTGGCATTC
ACTGTGTTTTGGATTTGGTTAAATAATTGCCTTTTGAAGGATAAAACAAATGAATGCTAC
AAAAATGTATGTTTAAGGAAATTCAATGGTACCACTGTTCTACAGTTTGAAATAATTTTA
TAATTGTAAAGATAGAAGATATATTAATAAGTAAATATGTAAAATTGTAAATATGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATATCACCCGCTTCTGCAACCCAAGCCGGTTGATGACTGGAGAGGATGGCTACTATT
TCACCAACCTGTGCTGTGCTGTGGCTTTCATTGAGAAATTAGATGCTCAGTCTTTGAATT
TAAGTCAGGAAGATTTCGATCGATACATGTCTGGCCAGACTTCTCCCAGGAAGCAAGAAT
CGGAGAACTGGTCTCCTGATGCTTGCTTGGGTGTTAAGCAGATGTATAAGAATTTGGATC
TCCTGTCTCAATTGAATGAACGGCAGGAAAGGATTATGAACGAAGCCAAGAAGCTTGAGA
AAGACCTAATAGATTGGACAGATGGAATCGCAAAAGAGGTTCAAGACATTGTTGAGAAAT
ATCCACTTGAAATTAAGCCCCCAAATCAGTCGTTAGCAGCTATTGACTCTGAAAATGTTG
AAAATGATAAACTTCCTCCACCGCTGCAACCTCAAGTTTATGCAGGATGATAAAAAATTG
ACGTAGATAGTATTTATTTGAGCCTAAATTGTAGCCAGCCCTTATTGCCACAGTCCACCA
ATTGGGATCTAGAGTATAACTTAATTGCTTATAAATATCAGAGCATTTTTAAAGGTACAG
TTTATGGGGATTGTTTTGTTCATTTTGTTTTTGTTTTTCCTGTCAGGGGAGGCTTAGGAA
ATAATAAAGTACTATTTATTTGGGTTACTGAAATAGATTCATTTAAGGCTTGTGTGAAAA
TTTTGTCTATAAATCTATTTTTTCTCCATGATTTTCCTATGTGCTTCCTCTGTGGCATTC
ACTGTGTTTTGGATTTGGTTAAATAATTGCCTTTTGAAGGATAAAACAAATGAATGCTAC
AAAAATGTATGTTTAAGGAAATTCAATGGTACCACTGTTCTACAGTTTGAAATAATTTTA
TAATTGTAAAGATAGAAGATATATTAATAAGTAAATATGTAAAATTGTAAATATGTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               150-349, + strand, RNAz p=0.720418

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-349, + strand, RNAz p=0.720418

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               71-960, gnl|bosTau2|chr25 (24108092-24108953)
               

               
               71-960, gnl|Hg17|chr7 (65718022-65718875)
               

               
               71-960, gnl|Mm7|chr5 (129450656-129451490)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-960, gnl|bosTau2|chr25 (24108092-24108953)
               

               
               71-960, gnl|Hg17|chr7 (65718022-65718875)
               

               
               71-960, gnl|Mm7|chr5 (129450656-129451490)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	71-960, gnl\|bosTau2\|chr25 (24108092-24108953)
	71-960, gnl\|Hg17\|chr7 (65718022-65718875)
	71-960, gnl\|Mm7\|chr5 (129450656-129451490)

	fbs (0.175346)
	sin (0.174948)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)
	cty (0.10408)
	ldo (0.0970026)