Non-Coding RNA Search

Ss1.1-rspl31_o17.5

Sequence:


               
               TTAAAAGATTTTTTGGCTTGTGGAACTGGAAAGTCCAGAGGTAGTGCTGGCTCCAGGTAA
AACTGATTCAGTGGCTCAGTATGTCTCTAAATACCAGACTGTTTTTCCCCCCGCTGCTCT
ACCTTCTGTAGGATCATCTGAAGCCCATGGCTCCTTGTGGCTGCCAGCGCTCCTAAGATT
ACATGTTTCCTCATTTATGTCCAGCCAGAAAGAGCAGGGCATCTCTGTGCCAGGAGTCTT
AGCAAAAGCCATAAGATTCACTCTGGTCAGGCCAGCCTGGGTCACATGCCTACACCTAAC
TTATCACTGTGGCCAGGAGATTGGTAATCTGCTTATTTATTGTACCTGTGGGCTGCACTT
TTCGAAGAGGGCAGGATCAGCCTCTTTAGAATCACATAGATCCTTAAATGGAAACTGGGA
GTGGGCAACTCCTGGAGAGGCAGCTGACACCTGGCCACTGCAATGAAGTATGCGTGGTTT
TAGCTTGCCAGGCTAAGAGCAACTCTGCCTGCTGCCTTTTTCCCTCATGCTCTAGGATTT
TTCCTTACTGCAGCAGGAGTCTCTTACCTCTTGTTTTAGTCTCAGAAGGAATGAGAGGAA
AGCCATTCTCCTTTAGGGACTATCTCTTTAGTCTCATTTAGATGACAATCCCCTCCCCCC
TTTTTTTAACCTACATCTTAGAGATGGATATTCTTCCTTTTCCTGTTTCTGAATTTTAGT
TTTCTCATTCCTGCTTCCCTATCCCCCACCCTACTGCCTCTGACCAATAAAGTGAAAAGA
TTTACTCCCTAGTTATTAAATTCATTCTGTATCCACCAGGTGTCAGTCTCTTGTCATACA
CGTGTCAAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAGATTTTTTGGCTTGTGGAACTGGAAAGTCCAGAGGTAGTGCTGGCTCCAGGTAA
AACTGATTCAGTGGCTCAGTATGTCTCTAAATACCAGACTGTTTTTCCCCCCGCTGCTCT
ACCTTCTGTAGGATCATCTGAAGCCCATGGCTCCTTGTGGCTGCCAGCGCTCCTAAGATT
ACATGTTTCCTCATTTATGTCCAGCCAGAAAGAGCAGGGCATCTCTGTGCCAGGAGTCTT
AGCAAAAGCCATAAGATTCACTCTGGTCAGGCCAGCCTGGGTCACATGCCTACACCTAAC
TTATCACTGTGGCCAGGAGATTGGTAATCTGCTTATTTATTGTACCTGTGGGCTGCACTT
TTCGAAGAGGGCAGGATCAGCCTCTTTAGAATCACATAGATCCTTAAATGGAAACTGGGA
GTGGGCAACTCCTGGAGAGGCAGCTGACACCTGGCCACTGCAATGAAGTATGCGTGGTTT
TAGCTTGCCAGGCTAAGAGCAACTCTGCCTGCTGCCTTTTTCCCTCATGCTCTAGGATTT
TTCCTTACTGCAGCAGGAGTCTCTTACCTCTTGTTTTAGTCTCAGAAGGAATGAGAGGAA
AGCCATTCTCCTTTAGGGACTATCTCTTTAGTCTCATTTAGATGACAATCCCCTCCCCCC
TTTTTTTAACCTACATCTTAGAGATGGATATTCTTCCTTTTCCTGTTTCTGAATTTTAGT
TTTCTCATTCCTGCTTCCCTATCCCCCACCCTACTGCCTCTGACCAATAAAGTGAAAAGA
TTTACTCCCTAGTTATTAAATTCATTCTGTATCCACCAGGTGTCAGTCTCTTGTCATACA
CGTGTCAAGACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               459-697, - strand, RNAz p=0.994004
               

               
               604-713, - strand, RNAz p=0.968292

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-697, - strand, RNAz p=0.994004
               

               
               604-713, - strand, RNAz p=0.968292

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               586-720, - strand, RNAmicro p=0.922956

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               586-720, - strand, RNAmicro p=0.922956

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000449, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000449, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-852, gnl|bosTau2|chr3 (16218007-16218859)
               

               
               4-852, gnl|canFam2|chr17 (63472234-63473100)
               

               
               4-852, gnl|dasNov1|scaffold_81280 (3844-2944)
               

               
               4-852, gnl|echTel1|scaffold_316629 (49156-48309)
               

               
               4-852, gnl|hg17|chr1 (148126178-148127053)
               

               
               4-852, gnl|Hg17|chr1 (148127387-148126567)
               

               
               4-852, gnl|loxAfr1|scaffold_19720 (43623-44477)
               

               
               4-852, gnl|mm7|chr3 (94834777-94833943)
               

               
               4-852, gnl|Mm7|chr3 (94833631-94834414)
               

               
               4-852, gnl|oryCun1|scaffold_203023 (13147-14004)
               

               
               4-852, gnl|panTro1|chr1 (129875878-129876761)
               

               
               4-852, gnl|rheMac2|chr1 (129772559-129773434)
               

               
               4-852, gnl|rn3|chr2 (189821820-189820982)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-852, gnl|bosTau2|chr3 (16218007-16218859)
               

               
               4-852, gnl|canFam2|chr17 (63472234-63473100)
               

               
               4-852, gnl|dasNov1|scaffold_81280 (3844-2944)
               

               
               4-852, gnl|echTel1|scaffold_316629 (49156-48309)
               

               
               4-852, gnl|hg17|chr1 (148126178-148127053)
               

               
               4-852, gnl|Hg17|chr1 (148127387-148126567)
               

               
               4-852, gnl|loxAfr1|scaffold_19720 (43623-44477)
               

               
               4-852, gnl|mm7|chr3 (94834777-94833943)
               

               
               4-852, gnl|Mm7|chr3 (94833631-94834414)
               

               
               4-852, gnl|oryCun1|scaffold_203023 (13147-14004)
               

               
               4-852, gnl|panTro1|chr1 (129875878-129876761)
               

               
               4-852, gnl|rheMac2|chr1 (129772559-129773434)
               

               
               4-852, gnl|rn3|chr2 (189821820-189820982)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pgl (0.236967)
               

               
               spl (0.143184)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               spl (0.143184)
               

               
               med (0.116252)

	459-697, - strand, RNAz p=0.994004
	604-713, - strand, RNAz p=0.968292

	4-852, gnl\|bosTau2\|chr3 (16218007-16218859)
	4-852, gnl\|canFam2\|chr17 (63472234-63473100)
	4-852, gnl\|dasNov1\|scaffold_81280 (3844-2944)
	4-852, gnl\|echTel1\|scaffold_316629 (49156-48309)
	4-852, gnl\|hg17\|chr1 (148126178-148127053)
	4-852, gnl\|Hg17\|chr1 (148127387-148126567)
	4-852, gnl\|loxAfr1\|scaffold_19720 (43623-44477)
	4-852, gnl\|mm7\|chr3 (94834777-94833943)
	4-852, gnl\|Mm7\|chr3 (94833631-94834414)
	4-852, gnl\|oryCun1\|scaffold_203023 (13147-14004)
	4-852, gnl\|panTro1\|chr1 (129875878-129876761)
	4-852, gnl\|rheMac2\|chr1 (129772559-129773434)
	4-852, gnl\|rn3\|chr2 (189821820-189820982)