Non-Coding RNA Search

Ss1.1-rspl32_b7.5

Sequence:


               
               TTTTTCCCCTCTTATTATGTGATCTCAGCCACACACAGGGCTTCTTACCTGGCCTCTACT
TGACCAACCCTGAGATTCCAGCCTTTTTTTGCTTTCATGAACTCCACCCTCTGGGGAAAG
GCAAAAGTGGCCTTGTCCTTACCCTTAGCTGCGTTAGGATTAAAGAAAGGGCTCTTGCAT
CTTTAATTTAGCCTTTTGTGATATTAGAAATGAGAGGAAATTAGGAAAGATGCATGTAAA
ACTATCCAATTATCTCTCTGAACCGGGGTAGGAAAAACAACAAATGCCTATATAAGAAAC
TCAGAGGCGTGGCAGAAAAGGAGTAAAGGGCAGAAGATACTTGGATTTATGCCTAGTTAG
GTTTGGGATGTTGAAAATAAAAAGCTAAACTGTGCAGTTGAACTTGGCCATAAAGTAAGG
CTGACTCCCAGCAGTTGAGGGTGGGGTCAGAACATGTTTACATGCAGGGTTCCCGTCCCC
AGACATTCCAAGCACCAACACCAGTGTTTACATTGTAAAATAGCCCTAGCACTTTCCTAG
TCCCAGACGCAAATCCCTTAGTATAAAACCAGGTCAGTATTTCTTACTGTGCTTCAGGTC
ATCAAAAAGATTGAGATTTAGAGGCACTATGTGCTGCTACGGGGAGGGGTTCTGTCAGCA
TTGGGAAAGGTGACAAAATGGGTTGGGTGTCTTCTTGAGATTTCAGGCATAATTATGCAA
ACAGATTTTTCAAATCTGTATGTGAGACATTTGCTTAACTTTTTGGGGGGTGGGGAGGGT
AACTAGTAACTAGGCTATTGATTAAAAATGTCTTATACTTTAGAGCTGCATATCTCACTT
CCTGACAGAACCAGGCATACAGAAGAGACAGAACTGTGTTCTGGCAAAGATCTTAATGCT
CCACAGCCTGAGTTGCTATTTCATCCAGTCAGAGAAACGGTCATGCTGTCAGTAGTGAGA
TAGAGAGCACCTAAAGAGAGCTGTCCCAAGTCCAGGGTCTCTTTCATGTCCGGCTTAATA
GGGTACCTTGAGCCATTGTTCAGCATGCTTTAGCCTAAATGTCAAATACTTTGTCTGCTT
AAAATGTTTCTCTCTTCACGAAACTTGGTTTCTGAGCACATAGCTGTTTCCCCTTCCTCC
TCTTGTGAGGTGTGTAAACCTCTATTTAGCCCAAGTTCTACATTAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCCCTCTTATTATGTGATCTCAGCCACACACAGGGCTTCTTACCTGGCCTCTACT
TGACCAACCCTGAGATTCCAGCCTTTTTTTGCTTTCATGAACTCCACCCTCTGGGGAAAG
GCAAAAGTGGCCTTGTCCTTACCCTTAGCTGCGTTAGGATTAAAGAAAGGGCTCTTGCAT
CTTTAATTTAGCCTTTTGTGATATTAGAAATGAGAGGAAATTAGGAAAGATGCATGTAAA
ACTATCCAATTATCTCTCTGAACCGGGGTAGGAAAAACAACAAATGCCTATATAAGAAAC
TCAGAGGCGTGGCAGAAAAGGAGTAAAGGGCAGAAGATACTTGGATTTATGCCTAGTTAG
GTTTGGGATGTTGAAAATAAAAAGCTAAACTGTGCAGTTGAACTTGGCCATAAAGTAAGG
CTGACTCCCAGCAGTTGAGGGTGGGGTCAGAACATGTTTACATGCAGGGTTCCCGTCCCC
AGACATTCCAAGCACCAACACCAGTGTTTACATTGTAAAATAGCCCTAGCACTTTCCTAG
TCCCAGACGCAAATCCCTTAGTATAAAACCAGGTCAGTATTTCTTACTGTGCTTCAGGTC
ATCAAAAAGATTGAGATTTAGAGGCACTATGTGCTGCTACGGGGAGGGGTTCTGTCAGCA
TTGGGAAAGGTGACAAAATGGGTTGGGTGTCTTCTTGAGATTTCAGGCATAATTATGCAA
ACAGATTTTTCAAATCTGTATGTGAGACATTTGCTTAACTTTTTGGGGGGTGGGGAGGGT
AACTAGTAACTAGGCTATTGATTAAAAATGTCTTATACTTTAGAGCTGCATATCTCACTT
CCTGACAGAACCAGGCATACAGAAGAGACAGAACTGTGTTCTGGCAAAGATCTTAATGCT
CCACAGCCTGAGTTGCTATTTCATCCAGTCAGAGAAACGGTCATGCTGTCAGTAGTGAGA
TAGAGAGCACCTAAAGAGAGCTGTCCCAAGTCCAGGGTCTCTTTCATGTCCGGCTTAATA
GGGTACCTTGAGCCATTGTTCAGCATGCTTTAGCCTAAATGTCAAATACTTTGTCTGCTT
AAAATGTTTCTCTCTTCACGAAACTTGGTTTCTGAGCACATAGCTGTTTCCCCTTCCTCC
TCTTGTGAGGTGTGTAAACCTCTATTTAGCCCAAGTTCTACATTAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-106, + strand, RNAz p=0.930537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-106, + strand, RNAz p=0.930537

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-218, gnl|bosTau2|chr1 (42936600-42936375)
               

               
               3-218, gnl|Hg17|chr3 (198147166-198147446)
               


               
               415-1186, gnl|bosTau2|chr1 (42936322-42935554)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-218, gnl|bosTau2|chr1 (42936600-42936375)
               

               
               3-218, gnl|Hg17|chr3 (198147166-198147446)
               


               
               415-1186, gnl|bosTau2|chr1 (42936322-42935554)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	3-218, gnl\|bosTau2\|chr1 (42936600-42936375)
	3-218, gnl\|Hg17\|chr3 (198147166-198147446)

	415-1186, gnl\|bosTau2\|chr1 (42936322-42935554)