Non-Coding RNA Search

Ss1.1-rspl32_c1.5

Sequence:


               
               ACTGAGAAGAACCACTGTGATATGGATCCCAAATATTTCATCTTAATTTTGTTTTGTGGA
CACCTGCATCATACATTTTTCCCAGAGACAGAAGCAACTACTACAGAGATTACTACAGAG
GTTCAGCCACAGTCTACTTTATTTAGATCATCAATACCATATGCCTCAGCTCATTCTCAA
GGCCCAAGAGAGAATCCTCTAGGTCAACCAACACAATTCAACAACCTTTCTTCTGGACAA
CCTATACCAACTCCCAAAGTTGCTACTGGACAATCAACACCAGCTGCCTATGCCTCTTCT
GGGAAACCAGCAGCACACACTTCTGTTGGACAACCACTTGCCTATGTTACCAAAAAACCA
ACGGCTATGACCAATACTTCCTCCCAAGGAACAGCACTACCTGTGTTCACCTCTGCCCGA
CAACTATCACCGTCCGTCCCTTCTTCTACCAGCCAACAATTACCATCTGTCCACACTCAA
ACTCAACAACCATCCTCTATGCACACTTCCAGAAAATCGATACCACCGACTGTTCATAAT
CTACCCACACCACCGACACCAAGTAGCATAAATTCACATAGGAATACACCAGGATTCATC
CTAGACCCTACCATGAACAAAAAAACCCCAGAGAAAACCAATTCTCATTCATCAACAGTT
GCCATATTAATTGGTGCAATTCTGACTTCTATGTTTGTAGCTATAATCATGATTGTATTG
TGGAAATGCTTGCAAAAACCAGTGATAAATGATCAAAACTGGGCAGGTAGGTCTCCATTT
GCTGATGGTGAAACTCCTGACATATGTTTGGGTAACATTAGAGAAAATGAAGTACCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGAGAAGAACCACTGTGATATGGATCCCAAATATTTCATCTTAATTTTGTTTTGTGGA
CACCTGCATCATACATTTTTCCCAGAGACAGAAGCAACTACTACAGAGATTACTACAGAG
GTTCAGCCACAGTCTACTTTATTTAGATCATCAATACCATATGCCTCAGCTCATTCTCAA
GGCCCAAGAGAGAATCCTCTAGGTCAACCAACACAATTCAACAACCTTTCTTCTGGACAA
CCTATACCAACTCCCAAAGTTGCTACTGGACAATCAACACCAGCTGCCTATGCCTCTTCT
GGGAAACCAGCAGCACACACTTCTGTTGGACAACCACTTGCCTATGTTACCAAAAAACCA
ACGGCTATGACCAATACTTCCTCCCAAGGAACAGCACTACCTGTGTTCACCTCTGCCCGA
CAACTATCACCGTCCGTCCCTTCTTCTACCAGCCAACAATTACCATCTGTCCACACTCAA
ACTCAACAACCATCCTCTATGCACACTTCCAGAAAATCGATACCACCGACTGTTCATAAT
CTACCCACACCACCGACACCAAGTAGCATAAATTCACATAGGAATACACCAGGATTCATC
CTAGACCCTACCATGAACAAAAAAACCCCAGAGAAAACCAATTCTCATTCATCAACAGTT
GCCATATTAATTGGTGCAATTCTGACTTCTATGTTTGTAGCTATAATCATGATTGTATTG
TGGAAATGCTTGCAAAAACCAGTGATAAATGATCAAAACTGGGCAGGTAGGTCTCCATTT
GCTGATGGTGAAACTCCTGACATATGTTTGGGTAACATTAGAGAAAATGAAGTACCCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13543536|gb|AAH05926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13543536|gb|AAH05926.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-365, - strand, RNAz p=0.770054

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-365, - strand, RNAz p=0.770054

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-832, gnl|bosTau2|chr19 (9796319-9795502)
               

               
               9-832, gnl|Hg17|chr17 (26656766-26655970)
               

               
               9-832, gnl|Mm7|chr11 (79598334-79597536)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-832, gnl|bosTau2|chr19 (9796319-9795502)
               

               
               9-832, gnl|Hg17|chr17 (26656766-26655970)
               

               
               9-832, gnl|Mm7|chr11 (79598334-79597536)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (1.14797)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.14797)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               tra (0.123092)

	9-832, gnl\|bosTau2\|chr19 (9796319-9795502)
	9-832, gnl\|Hg17\|chr17 (26656766-26655970)
	9-832, gnl\|Mm7\|chr11 (79598334-79597536)

	cbl (1.14797)
	cty (0.20816)
	fty (0.17584)
	cje (0.165235)
	csp (0.161186)
	spl (0.143184)
	tra (0.123092)