Non-Coding RNA Search

Ss1.1-rspl32_d23.5

Sequence:


               
               GTCATCATTCTCTTTTGAAAAACAAACAACAGTGCTTTAGGGTAGTGCTTTTAAAAGAAT
TGTTAACTCTAGGAAGAGGAAGTACCTGTGTTCTGACGTCTTAGTTGCCTTGAAAATCCT
GTATGGAACTGTAACAGCTCCCATGACTGGATGAGCAGCAGCGGGCTTGTGTGTGGAAAG
AACACCTGCCCCCTCAGATTCCGCTCTTTTCAGCCCCTTTCCATCGTAGTCTTATTCCTT
AAGACCCAAAGCTGTAATTTCCTTTAGCAATGCCCTAGAAGATATGTATTGTGTAGAATG
ATCATGTATTTATAAAAAATTTTACAGATTTAGATATAAGAGAGAAGATCATGTGTTTTG
GGGGTATTGTGCATGTTTTTTTGTTTCCCTTCACAGAAACTTGATTTTTTTCAAATCTAT
TGCGAGGTAGTCATAGTGTTTTTAATTAGACTATTAATATGAACTCTAAAACACTGTTAC
CAGTTATGGGCTCTGTCATCTGAGATTTTAAAGACTTAATTTGAAAATTAAACATTTAGA
ATTTGTTTTTGTTGTTTACCTTAAGAATAACAATAAACCACTGTTTAAAATAAAAGGACC
TTGATTCATACAGTTAAAATACTGGGGAAAAACTAAGCAAATTTTAGTTCTATAACCTGA
ATAGGATGAACTGAAATAAATTGTTGATAAAAAAATTCACTGTTTATTTGCAAATCTAGT
TTAGAAATGTCTGAAAGTTACACTGCATTTACATTTTTACAGAAACAATGCACAGATTGC
ATTCAAGCTCTGAATTGATTTCTTGCTTAGAGATGTTGTTGTGGTAGATGTAATTTTGCT
GCCAGAAGAAATACTTCAATTTTTAAATTTGTATTTATTTGTTAATTCTTGGCAATGACA
ACAACTATAATTCTAAAATATCTTTAGTCAGAATATAGAATCTGTTTCCCTATATTCGGG
CTGACTACTCAGACCCTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATCATTCTCTTTTGAAAAACAAACAACAGTGCTTTAGGGTAGTGCTTTTAAAAGAAT
TGTTAACTCTAGGAAGAGGAAGTACCTGTGTTCTGACGTCTTAGTTGCCTTGAAAATCCT
GTATGGAACTGTAACAGCTCCCATGACTGGATGAGCAGCAGCGGGCTTGTGTGTGGAAAG
AACACCTGCCCCCTCAGATTCCGCTCTTTTCAGCCCCTTTCCATCGTAGTCTTATTCCTT
AAGACCCAAAGCTGTAATTTCCTTTAGCAATGCCCTAGAAGATATGTATTGTGTAGAATG
ATCATGTATTTATAAAAAATTTTACAGATTTAGATATAAGAGAGAAGATCATGTGTTTTG
GGGGTATTGTGCATGTTTTTTTGTTTCCCTTCACAGAAACTTGATTTTTTTCAAATCTAT
TGCGAGGTAGTCATAGTGTTTTTAATTAGACTATTAATATGAACTCTAAAACACTGTTAC
CAGTTATGGGCTCTGTCATCTGAGATTTTAAAGACTTAATTTGAAAATTAAACATTTAGA
ATTTGTTTTTGTTGTTTACCTTAAGAATAACAATAAACCACTGTTTAAAATAAAAGGACC
TTGATTCATACAGTTAAAATACTGGGGAAAAACTAAGCAAATTTTAGTTCTATAACCTGA
ATAGGATGAACTGAAATAAATTGTTGATAAAAAAATTCACTGTTTATTTGCAAATCTAGT
TTAGAAATGTCTGAAAGTTACACTGCATTTACATTTTTACAGAAACAATGCACAGATTGC
ATTCAAGCTCTGAATTGATTTCTTGCTTAGAGATGTTGTTGTGGTAGATGTAATTTTGCT
GCCAGAAGAAATACTTCAATTTTTAAATTTGTATTTATTTGTTAATTCTTGGCAATGACA
ACAACTATAATTCTAAAATATCTTTAGTCAGAATATAGAATCTGTTTCCCTATATTCGGG
CTGACTACTCAGACCCTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q50HU4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q50HU4_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr14 (21062696-21063702)
               

               
               1-984, gnl|Hg17|chr8 (74626056-74625060)
               

               
               1-984, gnl|Mm7|chr1 (16532983-16532091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr14 (21062696-21063702)
               

               
               1-984, gnl|Hg17|chr8 (74626056-74625060)
               

               
               1-984, gnl|Mm7|chr1 (16532983-16532091)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	1-984, gnl\|bosTau2\|chr14 (21062696-21063702)
	1-984, gnl\|Hg17\|chr8 (74626056-74625060)
	1-984, gnl\|Mm7\|chr1 (16532983-16532091)

	bfe (0.149858)
	spl (0.143184)
	hlv (0.139256)
	ste (0.135208)
	kid (0.129735)
	thg (0.126791)
	med (0.116252)
	spc (0.113366)