Non-Coding RNA Search

Ss1.1-rspl32_d3.5

Sequence:


               
               AAGAATTTAAAATAATCTTTTTATTATTCTGTGCATTAGACTGTTTTGCTTTTAACTGTA
TCTGTTTTGAATACATTTTAAGAATAAGAGATTTGAAGAGAGTGAAACCCAAGTAAGAAA
GCTGAAGTGAGGACCTAAATGTAAAGGGAATGAGTAGTTTGTTTCTAAGTCTGTAAACAT
TTGTGAGTTATCCTGGAGATCTAAAAGATTTAGTAGGCACTAACTTTTACAGATTGTGTG
GTACAAATTATGCCAACAAAAATTTTCAGCCAATTTGTGCTCTATTTTGTCAAGATTCTG
TTTTATGTCTTAAATTTTGAGTCAAAGTTGATCAGAAATTGGGCGTAGTGGAAGGGCCGC
GATTTGAAAGTCACAACGTCTGTGACTGGGGTTGCCCTGGGCCACTTGACTGGGTGTCCA
TAAAGTAAATTATGGTTGCTTTTTCCTTTTTTTCCAACAAGTCACAGGGTAGCACCTTTC
ACCTAAGCAGCCTTCCTTGTGCTGAGGAAACCTAGGAGGCATTTCAAAAAAAGCTGACCT
GTTGCAATGCCACAGGATTCAGGATAAGAAAAGTACTTCAGCTTCAAATTCAGATACAGA
AATGAAACCTGAACAACGGCCTTCTTGTGTGAACCCTGGCAATCCTGTGTTTTCGTGTAT
GTTGGACCCAAGGTCACTCCATACAGCTACCTCACTATCAAAACCTAAGATGATTATGTA
TAAAACCAATTCAAGTAATTACGGTGAATTTTTACCTATGCCACAGTTTTTCCCCTGTTA
TTATACTCCAAAGGAGCAAGTATTTTCAGGCCATATCAGAGCTACTGGTTTTTATCAAAA
TAACACTCTAAATACTACACCTGACAGAACAAGAACACTTGATTTTCCTAATTTTCAACA
CACTCTATGAAAATATATTACTCAAATAAAGAGAAAATATACTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATTTAAAATAATCTTTTTATTATTCTGTGCATTAGACTGTTTTGCTTTTAACTGTA
TCTGTTTTGAATACATTTTAAGAATAAGAGATTTGAAGAGAGTGAAACCCAAGTAAGAAA
GCTGAAGTGAGGACCTAAATGTAAAGGGAATGAGTAGTTTGTTTCTAAGTCTGTAAACAT
TTGTGAGTTATCCTGGAGATCTAAAAGATTTAGTAGGCACTAACTTTTACAGATTGTGTG
GTACAAATTATGCCAACAAAAATTTTCAGCCAATTTGTGCTCTATTTTGTCAAGATTCTG
TTTTATGTCTTAAATTTTGAGTCAAAGTTGATCAGAAATTGGGCGTAGTGGAAGGGCCGC
GATTTGAAAGTCACAACGTCTGTGACTGGGGTTGCCCTGGGCCACTTGACTGGGTGTCCA
TAAAGTAAATTATGGTTGCTTTTTCCTTTTTTTCCAACAAGTCACAGGGTAGCACCTTTC
ACCTAAGCAGCCTTCCTTGTGCTGAGGAAACCTAGGAGGCATTTCAAAAAAAGCTGACCT
GTTGCAATGCCACAGGATTCAGGATAAGAAAAGTACTTCAGCTTCAAATTCAGATACAGA
AATGAAACCTGAACAACGGCCTTCTTGTGTGAACCCTGGCAATCCTGTGTTTTCGTGTAT
GTTGGACCCAAGGTCACTCCATACAGCTACCTCACTATCAAAACCTAAGATGATTATGTA
TAAAACCAATTCAAGTAATTACGGTGAATTTTTACCTATGCCACAGTTTTTCCCCTGTTA
TTATACTCCAAAGGAGCAAGTATTTTCAGGCCATATCAGAGCTACTGGTTTTTATCAAAA
TAACACTCTAAATACTACACCTGACAGAACAAGAACACTTGATTTTCCTAATTTTCAACA
CACTCTATGAAAATATATTACTCAAATAAAGAGAAAATATACTCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18584199|ref|XP_085236.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18584199|ref|XP_085236.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-487, gnl|bosTau2|chr10 (38776569-38777048)
               

               
               13-487, gnl|Hg17|chr15 (53489448-53490308)
               


               
               558-945, gnl|bosTau2|chr10 (38782761-38783143)
               

               
               558-945, gnl|Hg17|chr15 (53497708-53498099)
               

               
               558-945, gnl|Mm7|chr9 (73012700-73012317)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-487, gnl|bosTau2|chr10 (38776569-38777048)
               

               
               13-487, gnl|Hg17|chr15 (53489448-53490308)
               


               
               558-945, gnl|bosTau2|chr10 (38782761-38783143)
               

               
               558-945, gnl|Hg17|chr15 (53497708-53498099)
               

               
               558-945, gnl|Mm7|chr9 (73012700-73012317)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)

	13-487, gnl\|bosTau2\|chr10 (38776569-38777048)
	13-487, gnl\|Hg17\|chr15 (53489448-53490308)

	558-945, gnl\|bosTau2\|chr10 (38782761-38783143)
	558-945, gnl\|Hg17\|chr15 (53497708-53498099)
	558-945, gnl\|Mm7\|chr9 (73012700-73012317)