Non-Coding RNA Search

Ss1.1-rspl33_d8.5

Sequence:


               
               GCAGGAAGTATGTGGGGGGCTCTACACCCTCACCACCATGCCCAACATCGTGCTGGGTGG
ACGACACAAAGAGCAAGACATACTTCCTGTCCCTGAAGAGTCTGTGATTGATTCCATGAC
AGGAAGCTTTCCCAGGATGACAGGCTTAAATGAAACCAGCTTAGACGGGGGGGGGCTGTG
TGTTTACCTCTAAACCCACTTGGATAGAGTCATTATTTCAAAGGTTGCTCTATACTGAAC
CATGGAGAGGGTTCTATGTTTATCTACCTTCAAGAAAGCCAGCAAGTAAATATCACCAAC
AGGCATGAATATATATTTGAGAAGTTCCCAGCAGCCTTTCGGCAATAATTGGGTGGCCCT
TGTGGGCAGAACACACTCAACCAAGGGGGTGGAGGGAATTACAATGAAAATAGAGCTCTG
TTCCTGCCCACAGGGGGAGCTTACATTTAGGAAAAGACAAACGCAAATATGTGCATGAAC
CAAAACATCATCTTTATAAACACCTTTGAGATAAATCCTTGTGATATGTGCTTATATGAT
CATAGGACTACCCTGCTTTCCTTGTATGCAGTGAATTTTACTGGCAGAATCAATATGGAA
GCCGTAAGGGGGTTTTATCAGTTGCAGTGTTGTCCACACAGGCTACAGCCAGAAATCCCT
GTTACACACATGGCTGGGTTTCTGGTCACTGCAATGGTACTTTCCTCCTGTGTTCCTGCC
TCAGAGTTGGTGATGCCCACTAGTGCCCATTACCCGCTGAAATGATTTTGGTTCATCATT
TCCTTTTCCTTGTAAAGGGGAACTAAAGCCTTTAATAGACTTACGGGCCCTAAAACTGTG
GAACCCCGAAGGAGAGCTGTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGAAGTATGTGGGGGGCTCTACACCCTCACCACCATGCCCAACATCGTGCTGGGTGG
ACGACACAAAGAGCAAGACATACTTCCTGTCCCTGAAGAGTCTGTGATTGATTCCATGAC
AGGAAGCTTTCCCAGGATGACAGGCTTAAATGAAACCAGCTTAGACGGGGGGGGGCTGTG
TGTTTACCTCTAAACCCACTTGGATAGAGTCATTATTTCAAAGGTTGCTCTATACTGAAC
CATGGAGAGGGTTCTATGTTTATCTACCTTCAAGAAAGCCAGCAAGTAAATATCACCAAC
AGGCATGAATATATATTTGAGAAGTTCCCAGCAGCCTTTCGGCAATAATTGGGTGGCCCT
TGTGGGCAGAACACACTCAACCAAGGGGGTGGAGGGAATTACAATGAAAATAGAGCTCTG
TTCCTGCCCACAGGGGGAGCTTACATTTAGGAAAAGACAAACGCAAATATGTGCATGAAC
CAAAACATCATCTTTATAAACACCTTTGAGATAAATCCTTGTGATATGTGCTTATATGAT
CATAGGACTACCCTGCTTTCCTTGTATGCAGTGAATTTTACTGGCAGAATCAATATGGAA
GCCGTAAGGGGGTTTTATCAGTTGCAGTGTTGTCCACACAGGCTACAGCCAGAAATCCCT
GTTACACACATGGCTGGGTTTCTGGTCACTGCAATGGTACTTTCCTCCTGTGTTCCTGCC
TCAGAGTTGGTGATGCCCACTAGTGCCCATTACCCGCTGAAATGATTTTGGTTCATCATT
TCCTTTTCCTTGTAAAGGGGAACTAAAGCCTTTAATAGACTTACGGGCCCTAAAACTGTG
GAACCCCGAAGGAGAGCTGTGAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               26-169, - strand, RNAz p=0.711165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-169, - strand, RNAz p=0.711165

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-864, gnl|bosTau2|chr9 (20893420-20894269)
               

               
               26-864, gnl|Hg17|chr6 (111040499-111039332)
               

               
               26-864, gnl|Mm7|chr10 (40268840-40269657)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-864, gnl|bosTau2|chr9 (20893420-20894269)
               

               
               26-864, gnl|Hg17|chr6 (111040499-111039332)
               

               
               26-864, gnl|Mm7|chr10 (40268840-40269657)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ecc (0.115035)

	26-864, gnl\|bosTau2\|chr9 (20893420-20894269)
	26-864, gnl\|Hg17\|chr6 (111040499-111039332)
	26-864, gnl\|Mm7\|chr10 (40268840-40269657)