Non-Coding RNA Search

Ss1.1-rspl33_e4.5

Sequence:


               
               AGGCCAAGCCTTATGGACACCCCAGAATTGCTTGGAACTGACATCGCTGGTCCTGTGAGC
ACAGAGAACAAGGATGGTGAGGCCTTTGATGTGCAGCCACCAGAGCGTTTGCAAGTTGTC
TGCAGAACATGTCAATAGTTCAGCGAGCCTGCTCAGGTCCATGATTAAATGAGCAAGGGT
CTGGCCGGAATAAGGTGTGATGGAAATGCAGCACCCAGCGGGAGGCCCCTTCCTGCTTTT
CTTATCCCAGAAAGGGGCTTTATAGTCACTCACTGCCAGTGTGTAGCAGACTGATGTTTC
TAAATAATGTAAGAGTCTAAATCAGTGCTAGAGTTACAAGTTGTTCCCTAACAGGATACG
TGGTTTCCTGTTGTCTTACCCCTGTCACCTCCAGTGGGGACTCCAGCTAGAGATAGAAGT
TTTTCAGTATTTAAAATTACCATTTAACAATTCTATTGAATATAAACTTGTGGGTCTTGG
TGCAGTTTGTTAATATTTAGTGGTCCCAAAAGGATCATGTCTTGTTTTCTGGAAAAAAGG
CACTATGAACCCTAAGACAGTCTGATGTCATCCATGGATGCTTTCTGGACAGGTGGTGAG
AAACAAGTCTTTCCTCCCTTAAGAATTTTTGGTAAAATTTCCACAGAGCAGTGCAGGGTG
TGTGTGTGATCCCATTATGTGTGTAACTGGGCCTCAAAAGGGGACCTCCACAGGTCTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCAAGCCTTATGGACACCCCAGAATTGCTTGGAACTGACATCGCTGGTCCTGTGAGC
ACAGAGAACAAGGATGGTGAGGCCTTTGATGTGCAGCCACCAGAGCGTTTGCAAGTTGTC
TGCAGAACATGTCAATAGTTCAGCGAGCCTGCTCAGGTCCATGATTAAATGAGCAAGGGT
CTGGCCGGAATAAGGTGTGATGGAAATGCAGCACCCAGCGGGAGGCCCCTTCCTGCTTTT
CTTATCCCAGAAAGGGGCTTTATAGTCACTCACTGCCAGTGTGTAGCAGACTGATGTTTC
TAAATAATGTAAGAGTCTAAATCAGTGCTAGAGTTACAAGTTGTTCCCTAACAGGATACG
TGGTTTCCTGTTGTCTTACCCCTGTCACCTCCAGTGGGGACTCCAGCTAGAGATAGAAGT
TTTTCAGTATTTAAAATTACCATTTAACAATTCTATTGAATATAAACTTGTGGGTCTTGG
TGCAGTTTGTTAATATTTAGTGGTCCCAAAAGGATCATGTCTTGTTTTCTGGAAAAAAGG
CACTATGAACCCTAAGACAGTCTGATGTCATCCATGGATGCTTTCTGGACAGGTGGTGAG
AAACAAGTCTTTCCTCCCTTAAGAATTTTTGGTAAAATTTCCACAGAGCAGTGCAGGGTG
TGTGTGTGATCCCATTATGTGTGTAACTGGGCCTCAAAAGGGGACCTCCACAGGTCTAAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-707, gnl|bosTau2|chr17 (35940315-35941046)
               

               
               7-707, gnl|Hg17|chr12 (108817114-108818003)
               

               
               7-707, gnl|Mm7|chr5 (113941939-113942661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-707, gnl|bosTau2|chr17 (35940315-35941046)
               

               
               7-707, gnl|Hg17|chr12 (108817114-108818003)
               

               
               7-707, gnl|Mm7|chr5 (113941939-113942661)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.286369)
               

               
               fcc (0.197785)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               fcc (0.197785)

	7-707, gnl\|bosTau2\|chr17 (35940315-35941046)
	7-707, gnl\|Hg17\|chr12 (108817114-108818003)
	7-707, gnl\|Mm7\|chr5 (113941939-113942661)