Non-Coding RNA Search

Ss1.1-rspl33_f12.5

Sequence:


               
               GACCTCCTCAAGCCACAGCGGCACTCACTTCTTAGCCTCTTGTCATCGAGTTCTCAGGTA
GTGCGGAGAGGCAAGCCAGGCACAGCAAGCAAGCACCTCTGTCCTACTGGCTACAAAGTG
CAAGCTCAAACTCTGTGACCGAGTCAACAACTTCCAGATTGCTTCAGTGTAAAATGTTCA
CAGAGAAGAAAAACATTTCTAAATGTGTTTGAGTTACCAGGACAGCTCAAATACCTTCTG
ACAAAAAGCTCCCTCATGGCCTGGGAAGAAGTGACACTAAGCCAATGCCTTCTGCTAGAG
CAGAGCTGGAGGTGGGGGGAGCAATGGGTTCCTAGGCTTGATATCCTCACAGGCAGTGAG
GCAGCTACCCTGATGGCTGCAATCAGCCCACCACAGTCATAGCACATTCCCCCACCCTCC
TTCCAGTCCCAGTGTGACCACTGCTGGCAGCAAGAAGCCAAGCCAGCAGCCTCCACTGAG
AGCCCAGGCTCTGAGTGCCAAAGGACAGTAAGCCCTCTGGTTATCTCTAGTTACAGACAA
GGACAGCTTTGACTGCTCCCATCATCATCCCTTCCTTCATCCGACTTTAATGAACTTTTA
CAAACTAACAGTCACCAGCACCAAAGAATTAAGTCAACTAACCTGCCTTGAATTTTAGAC
CAGCAATCCATATGGCTTTATCTGGTATAAATCTTCTGCCTTTGATCATTTCTGGACCGT
GTAGGAAAAAGGAATAGCAATTATTAAAATCTTAAGCCAGAGAACACTATTTTTACATAA
CAGTTTCTTAACCTAAAATCAAGGCCTTGAGAACCCTTCCCTAAGGGTTGCCTGTGATTC
CTTCATGCTACTGTTGAGGGCTAAGTCTCTTATTGCAAATGTGAGCGCTAATATCTCCCA
CAGGCTAGAGGAACTTGATAGTTTATTATCCACTGCCTCTTAACAAGGACACATCTGACA
TCCAGTGTTTAGCTGGAATAAGCAGCATATTGTAATGACAAAACAGAAAATGGATTCATC
TTATAGGCAGAAGGTATTTGGCAAATTTTTATGTATTGTATATGTACTGTATAAGTAACT
TATTCTTGAAGAATGCAAATTTTGCTATAATGTACAAACTGCTACATGTGAATTAAAAGG
AAATTTTCAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCCTCAAGCCACAGCGGCACTCACTTCTTAGCCTCTTGTCATCGAGTTCTCAGGTA
GTGCGGAGAGGCAAGCCAGGCACAGCAAGCAAGCACCTCTGTCCTACTGGCTACAAAGTG
CAAGCTCAAACTCTGTGACCGAGTCAACAACTTCCAGATTGCTTCAGTGTAAAATGTTCA
CAGAGAAGAAAAACATTTCTAAATGTGTTTGAGTTACCAGGACAGCTCAAATACCTTCTG
ACAAAAAGCTCCCTCATGGCCTGGGAAGAAGTGACACTAAGCCAATGCCTTCTGCTAGAG
CAGAGCTGGAGGTGGGGGGAGCAATGGGTTCCTAGGCTTGATATCCTCACAGGCAGTGAG
GCAGCTACCCTGATGGCTGCAATCAGCCCACCACAGTCATAGCACATTCCCCCACCCTCC
TTCCAGTCCCAGTGTGACCACTGCTGGCAGCAAGAAGCCAAGCCAGCAGCCTCCACTGAG
AGCCCAGGCTCTGAGTGCCAAAGGACAGTAAGCCCTCTGGTTATCTCTAGTTACAGACAA
GGACAGCTTTGACTGCTCCCATCATCATCCCTTCCTTCATCCGACTTTAATGAACTTTTA
CAAACTAACAGTCACCAGCACCAAAGAATTAAGTCAACTAACCTGCCTTGAATTTTAGAC
CAGCAATCCATATGGCTTTATCTGGTATAAATCTTCTGCCTTTGATCATTTCTGGACCGT
GTAGGAAAAAGGAATAGCAATTATTAAAATCTTAAGCCAGAGAACACTATTTTTACATAA
CAGTTTCTTAACCTAAAATCAAGGCCTTGAGAACCCTTCCCTAAGGGTTGCCTGTGATTC
CTTCATGCTACTGTTGAGGGCTAAGTCTCTTATTGCAAATGTGAGCGCTAATATCTCCCA
CAGGCTAGAGGAACTTGATAGTTTATTATCCACTGCCTCTTAACAAGGACACATCTGACA
TCCAGTGTTTAGCTGGAATAAGCAGCATATTGTAATGACAAAACAGAAAATGGATTCATC
TTATAGGCAGAAGGTATTTGGCAAATTTTTATGTATTGTATATGTACTGTATAAGTAACT
TATTCTTGAAGAATGCAAATTTTGCTATAATGTACAAACTGCTACATGTGAATTAAAAGG
AAATTTTCAGAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               255-512, - strand, RNAz p=0.942752

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-512, - strand, RNAz p=0.942752

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-1152, gnl|bosTau2|chr17 (29390287-29389130)
               

               
               20-1152, gnl|Hg17|chr12 (110351075-110352141)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1152, gnl|bosTau2|chr17 (29390287-29389130)
               

               
               20-1152, gnl|Hg17|chr12 (110351075-110352141)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               spl (0.429553)
               

               
               elu (0.385356)
               

               
               jej (0.296765)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               jej (0.296765)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	20-1152, gnl\|bosTau2\|chr17 (29390287-29389130)
	20-1152, gnl\|Hg17\|chr12 (110351075-110352141)

	spl (0.429553)
	elu (0.385356)
	jej (0.296765)
	bla (0.248694)
	tra (0.246184)
	cty (0.20816)
	hea (0.204499)
	mga (0.160205)
	tbr (0.154178)
	hyp (0.142837)
	eep (0.122564)
	cly (0.120642)