Non-Coding RNA Search

Ss1.1-rspl35_d15.5

Sequence:


               
               TCTAAATTCTGCACATAAGCAGTTTATTCTATTTATTAGCCAAGTTGGCTCTAAATATCC
ATGGAAATTAAGAATGACAATCATAGGGATCACTTCATTTTATTTTCAGTGGGGCTTAAA
CAAAGTTTTTATGACTTTACCATCTCATTTTAGATTTTTTTCTAATTGTGTAAATGTAAC
ATAGAAATAGAATTTATTTTTGGTTCATGAATACTTAGTGAAATATAAGTTATGTATTCC
CTTTTTGTTCTCTATCCATATATGTTGGTCCAGACTAGAAGTTGACAAGTCACTGTACCT
CATGGGTAGTGAATTATCAGCCACAGTGAGAGAGCAGAGTCCCACCTGCAGCTGAAGCAG
TAAAACCCTTCACTCGGGTTCTCATAGAGTGTAGAACCCACTGTCCACAGACTCAGACTT
TCACTTTTTTTTTTTTTCTTATGGAAAGTTGATGAATTGAACATGGTGAATTTCCAGTAC
AGCCAGGAGAGCGTCAGTTTGCTTTGTGAATCCACATCAGTCTTGTAAGGTAGTGCTATG
ACCATTTAATAGCAAGAAGCATGAATGCTATTATAAAGGTGAAAATCTGCCTCTGAGATT
GGCCATTGACAAAAGTCCCATCGTGCCAGTTGGGTTAAAGAATGTTAAGTGACTTCTTTT
TCGGTGCTCCCAATTTCACACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAAATTCTGCACATAAGCAGTTTATTCTATTTATTAGCCAAGTTGGCTCTAAATATCC
ATGGAAATTAAGAATGACAATCATAGGGATCACTTCATTTTATTTTCAGTGGGGCTTAAA
CAAAGTTTTTATGACTTTACCATCTCATTTTAGATTTTTTTCTAATTGTGTAAATGTAAC
ATAGAAATAGAATTTATTTTTGGTTCATGAATACTTAGTGAAATATAAGTTATGTATTCC
CTTTTTGTTCTCTATCCATATATGTTGGTCCAGACTAGAAGTTGACAAGTCACTGTACCT
CATGGGTAGTGAATTATCAGCCACAGTGAGAGAGCAGAGTCCCACCTGCAGCTGAAGCAG
TAAAACCCTTCACTCGGGTTCTCATAGAGTGTAGAACCCACTGTCCACAGACTCAGACTT
TCACTTTTTTTTTTTTTCTTATGGAAAGTTGATGAATTGAACATGGTGAATTTCCAGTAC
AGCCAGGAGAGCGTCAGTTTGCTTTGTGAATCCACATCAGTCTTGTAAGGTAGTGCTATG
ACCATTTAATAGCAAGAAGCATGAATGCTATTATAAAGGTGAAAATCTGCCTCTGAGATT
GGCCATTGACAAAAGTCCCATCGTGCCAGTTGGGTTAAAGAATGTTAAGTGACTTCTTTT
TCGGTGCTCCCAATTTCACACTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               317-435, - strand, RNAz p=0.853888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-435, - strand, RNAz p=0.853888

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-684, gnl|bosTau2|chr15 (24196244-24196923)
               

               
               1-684, gnl|Hg17|chr11 (15947995-15947321)
               

               
               1-684, gnl|Mm7|chr7 (111390246-111389609)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr15 (24196244-24196923)
               

               
               1-684, gnl|Hg17|chr11 (15947995-15947321)
               

               
               1-684, gnl|Mm7|chr7 (111390246-111389609)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               spl (0.143184)

	1-684, gnl\|bosTau2\|chr15 (24196244-24196923)
	1-684, gnl\|Hg17\|chr11 (15947995-15947321)
	1-684, gnl\|Mm7\|chr7 (111390246-111389609)