Non-Coding RNA Search

Ss1.1-rspl35_k7.5

Sequence:


               
               TCGTCCTTGATGAACCCCCTCTCCTCCCCTCCGGCCTGCAACAACAACTCTAAAATCCAC
AAGCGCTCTGTCTCCGTGACATCCATTACCTCGACAGGGCTGCCCCCTGTCTACAACCAG
CAGAACGAAGACACCTGCATAATCCGCATCAGCGTGGAGGACGACAACGGCAACATGTAC
AAGAGCATCATGCTGACCAGCCAGGATAAGACCCCCGCCGTGATCCAGAGGGCCATGTTG
AAGCACAACCTGGACTCGGACCCCGCGGAGGAGTACGAGCTGGTGCAGGTCATCTCCGAG
GACAAAGAACTCGTGATCCCAGACTCGGCAAATGTCTTCTATGCCATGAACAGCCAAGTC
AACTTTGACTTCATTTTACGCAAAAAGAACTCGGTGGAGGAGCAGGTGAAACTGCGGAGC
CGGACCAGCTTGACGTTGCCCAGGACAGCTAAACGGGGCTGCTGGAGCAACAGACACAGC
AAAATCACCCTCTGAAGGGAGAGACCAGTGGCCCCTCGCTTGCCAAGGGCACCGTGGGGC
CAACCACAGACTGTGGGGATTGCATCTACCACCCAGTGTTAGAGGGTTGTTGGCAAAGTG
GACAGATATTTATTGGGTGCTTCCGGTGTGATTGGCATTCTGGGGCAACTGAAGATGAAC
TTGACATGAAAAGGATGAATGAGTCACTGATTCTCTTTGAACTATCTGAGGACGGAAATG
CAAAATTATCCACATTTATAAATATATGTGTAGGCACACATATTTGGTATGTATGTGTAT
ATGTATATAAATACGAGGGACTTATGGGATATTCTGGACTATGGAAAAACACATTTGCAC
AATGGCCTGGGAGGCCGAGGTCACTTTTTACAGGGAAATAGAAGGAACTGAGAACCTCGT
CTCATACCTTCCAAGTAAGTGGAACCCATCCCAGGACTACAGAATGTCCTTTGTGCCAGT
ATTACAAGAAGTCCAAACTATTTTTTATAAAGGGAGAGGATTACCTTCTCAAGCAAGTGC
CGCCAGAAAAGAAGCACCGCAGCGTTGGGAGCTACCACGGGCTGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTCCTTGATGAACCCCCTCTCCTCCCCTCCGGCCTGCAACAACAACTCTAAAATCCAC
AAGCGCTCTGTCTCCGTGACATCCATTACCTCGACAGGGCTGCCCCCTGTCTACAACCAG
CAGAACGAAGACACCTGCATAATCCGCATCAGCGTGGAGGACGACAACGGCAACATGTAC
AAGAGCATCATGCTGACCAGCCAGGATAAGACCCCCGCCGTGATCCAGAGGGCCATGTTG
AAGCACAACCTGGACTCGGACCCCGCGGAGGAGTACGAGCTGGTGCAGGTCATCTCCGAG
GACAAAGAACTCGTGATCCCAGACTCGGCAAATGTCTTCTATGCCATGAACAGCCAAGTC
AACTTTGACTTCATTTTACGCAAAAAGAACTCGGTGGAGGAGCAGGTGAAACTGCGGAGC
CGGACCAGCTTGACGTTGCCCAGGACAGCTAAACGGGGCTGCTGGAGCAACAGACACAGC
AAAATCACCCTCTGAAGGGAGAGACCAGTGGCCCCTCGCTTGCCAAGGGCACCGTGGGGC
CAACCACAGACTGTGGGGATTGCATCTACCACCCAGTGTTAGAGGGTTGTTGGCAAAGTG
GACAGATATTTATTGGGTGCTTCCGGTGTGATTGGCATTCTGGGGCAACTGAAGATGAAC
TTGACATGAAAAGGATGAATGAGTCACTGATTCTCTTTGAACTATCTGAGGACGGAAATG
CAAAATTATCCACATTTATAAATATATGTGTAGGCACACATATTTGGTATGTATGTGTAT
ATGTATATAAATACGAGGGACTTATGGGATATTCTGGACTATGGAAAAACACATTTGCAC
AATGGCCTGGGAGGCCGAGGTCACTTTTTACAGGGAAATAGAAGGAACTGAGAACCTCGT
CTCATACCTTCCAAGTAAGTGGAACCCATCCCAGGACTACAGAATGTCCTTTGTGCCAGT
ATTACAAGAAGTCCAAACTATTTTTTATAAAGGGAGAGGATTACCTTCTCAAGCAAGTGC
CGCCAGAAAAGAAGCACCGCAGCGTTGGGAGCTACCACGGGCTGCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7245666|pdb|1EF5|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7245666|pdb|1EF5|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               425-544, - strand, RNAz p=0.995409
               

               
               721-818, + strand, RNAz p=0.965574

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-544, - strand, RNAz p=0.995409
               

               
               721-818, + strand, RNAz p=0.965574

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF186779, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF186779, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               306-1068, gnl|bosTau2|chr5 (6511539-6512302)
               

               
               306-1068, gnl|Hg17|chr1 (180626894-180627671)
               

               
               306-1068, gnl|Mm7|chr1 (152480268-152479480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               306-1068, gnl|bosTau2|chr5 (6511539-6512302)
               

               
               306-1068, gnl|Hg17|chr1 (180626894-180627671)
               

               
               306-1068, gnl|Mm7|chr1 (152480268-152479480)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	425-544, - strand, RNAz p=0.995409
	721-818, + strand, RNAz p=0.965574

	306-1068, gnl\|bosTau2\|chr5 (6511539-6512302)
	306-1068, gnl\|Hg17\|chr1 (180626894-180627671)
	306-1068, gnl\|Mm7\|chr1 (152480268-152479480)