Non-Coding RNA Search

Ss1.1-rspl37_h24.5

Sequence:


               
               GTGGGACAGAGGCCGAAATGATACTCCCCCCCTTTTCCCCAAAGCCCAGAACTCCTACCA
AGAGGTACTGGCAGTTAAGCAGTCGGCCACCCCCCACACAACACTATCTGGTAGGAAATA
TTTGCTCAGGATTGTTTCGACTTTAACTGCTTCCAGGAAGGAGGATAGGGAGGTAAGATT
TTTTTTAAGAGAACCACCGAGCACTGAAGTGCATCAAAGGAAGGAGAGCAAGGCAGGGGT
CTGGGACAGCAAGCCAGCTCTGCCTTTTCTCCAGAGGCTGGTGTGCTAGAGGGGAGTCAT
GAAGGGTTTGGAAGGGTGGACCCTTGTCACTCAAAATGTCCCAGAACCCAGGACCTGGGG
AAGTTCTCAGCCTGGAGGTAAACCTCCCTGTCAAAGATGGAGAGACTGAGAGGACGGGTA
TGGAGAAAAACTTCGGTGCAGAAGCCCCTGGCGTGCCTTTGTTACTGCCCCAAGGCAGTT
GGCCTGGACTGTGTCTGTATATTGTGTATCTGAGGCACAGTGGAGGTCTAACCACAGGGT
GGCTTTGACTGCATCAAGGCTGGTGAGGGAAAGAGAGCTAAGGTAGAAAGAATGGCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGACAGAGGCCGAAATGATACTCCCCCCCTTTTCCCCAAAGCCCAGAACTCCTACCA
AGAGGTACTGGCAGTTAAGCAGTCGGCCACCCCCCACACAACACTATCTGGTAGGAAATA
TTTGCTCAGGATTGTTTCGACTTTAACTGCTTCCAGGAAGGAGGATAGGGAGGTAAGATT
TTTTTTAAGAGAACCACCGAGCACTGAAGTGCATCAAAGGAAGGAGAGCAAGGCAGGGGT
CTGGGACAGCAAGCCAGCTCTGCCTTTTCTCCAGAGGCTGGTGTGCTAGAGGGGAGTCAT
GAAGGGTTTGGAAGGGTGGACCCTTGTCACTCAAAATGTCCCAGAACCCAGGACCTGGGG
AAGTTCTCAGCCTGGAGGTAAACCTCCCTGTCAAAGATGGAGAGACTGAGAGGACGGGTA
TGGAGAAAAACTTCGGTGCAGAAGCCCCTGGCGTGCCTTTGTTACTGCCCCAAGGCAGTT
GGCCTGGACTGTGTCTGTATATTGTGTATCTGAGGCACAGTGGAGGTCTAACCACAGGGT
GGCTTTGACTGCATCAAGGCTGGTGAGGGAAAGAGAGCTAAGGTAGAAAGAATGGCTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-463, - strand, RNAz p=0.999853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-463, - strand, RNAz p=0.999853

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-589, gnl|bosTau2|chr19 (36920644-36920048)
               

               
               1-589, gnl|Hg17|chr17 (37826722-37826090)
               

               
               1-589, gnl|Mm7|chr11 (101077716-101077015)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-589, gnl|bosTau2|chr19 (36920644-36920048)
               

               
               1-589, gnl|Hg17|chr17 (37826722-37826090)
               

               
               1-589, gnl|Mm7|chr11 (101077716-101077015)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ldo (0.0970026)

	1-589, gnl\|bosTau2\|chr19 (36920644-36920048)
	1-589, gnl\|Hg17\|chr17 (37826722-37826090)
	1-589, gnl\|Mm7\|chr11 (101077716-101077015)