Non-Coding RNA Search

Ss1.1-rspl37_k19.5

Sequence:


               
               GTTTCCAGGACTGGGAGGGCAAGATCATGGTAGATGAACTGAAGCAGGAAGTTATCAGTA
CCAGCAGCAAAGCAGAACCGCCCCAGTGTACCTCTCTGGCCTGGTCTGCTGATGGCCAGG
TAAGTGGATCTGTTCTCAGGTGATTTAGCTTTAAACCCTTACTCATTTTCTGCTTTTTGT
CAGCCAGTTATAGAACCAATGTTCTTGACATAAAGTAAAATGATTTCCATTTCGCAGAAC
CCAGTTAGCTGTGCCAGTGAACAGATAACATGTTCATGCATCTATAGGGGGACTGAAGGG
TCTTTAATTAAGACCTTGATTAATCTGACCAGTTTACAAACATGCATATTTACTGTTATC
TACTCTAGGAATACATAATCATCTGTGAGTGGTAGTTGAAAGATGAGCTCTTTAAAAGGA
GAGCCATCTTGTTACACTGGTGGGACTAGAAAATGTCATAGCTTGGACTTGACACTTGTT
TCTCCCTTACAGACTCTGTTTGCTGGCTACACAGACAACCTGGTGCGAGTGTGGCAGGTG
ACCATTGGCACCCGCTAGAAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCCAGGACTGGGAGGGCAAGATCATGGTAGATGAACTGAAGCAGGAAGTTATCAGTA
CCAGCAGCAAAGCAGAACCGCCCCAGTGTACCTCTCTGGCCTGGTCTGCTGATGGCCAGG
TAAGTGGATCTGTTCTCAGGTGATTTAGCTTTAAACCCTTACTCATTTTCTGCTTTTTGT
CAGCCAGTTATAGAACCAATGTTCTTGACATAAAGTAAAATGATTTCCATTTCGCAGAAC
CCAGTTAGCTGTGCCAGTGAACAGATAACATGTTCATGCATCTATAGGGGGACTGAAGGG
TCTTTAATTAAGACCTTGATTAATCTGACCAGTTTACAAACATGCATATTTACTGTTATC
TACTCTAGGAATACATAATCATCTGTGAGTGGTAGTTGAAAGATGAGCTCTTTAAAAGGA
GAGCCATCTTGTTACACTGGTGGGACTAGAAAATGTCATAGCTTGGACTTGACACTTGTT
TCTCCCTTACAGACTCTGTTTGCTGGCTACACAGACAACCTGGTGCGAGTGTGGCAGGTG
ACCATTGGCACCCGCTAGAAACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38141516|emb|CAE53390.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38141516|emb|CAE53390.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-160, gnl|bosTau2|chr7 (27008427-27008272)
               

               
               5-160, gnl|Hg17|chr5 (180597329-180597169)
               

               
               5-160, gnl|Mm7|chr11 (48762294-48762448)
               


               
               8-119, gnl|bosTau2|chr21 (26242325-26242431)
               

               
               8-119, gnl|Hg17|chr5 (180597705-180597215)
               

               
               8-119, gnl|Mm7|chr11 (48762297-48762408)
               


               
               300-563, gnl|bosTau2|chr7 (27008134-27007858)
               

               
               300-563, gnl|Hg17|chr5 (180597003-180596579)
               

               
               300-563, gnl|Mm7|chr11 (48762558-48762802)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-160, gnl|bosTau2|chr7 (27008427-27008272)
               

               
               5-160, gnl|Hg17|chr5 (180597329-180597169)
               

               
               5-160, gnl|Mm7|chr11 (48762294-48762448)
               


               
               8-119, gnl|bosTau2|chr21 (26242325-26242431)
               

               
               8-119, gnl|Hg17|chr5 (180597705-180597215)
               

               
               8-119, gnl|Mm7|chr11 (48762297-48762408)
               


               
               300-563, gnl|bosTau2|chr7 (27008134-27007858)
               

               
               300-563, gnl|Hg17|chr5 (180597003-180596579)
               

               
               300-563, gnl|Mm7|chr11 (48762558-48762802)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               nca (0.136874)
               

               
               sug (0.127291)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               sug (0.127291)

	5-160, gnl\|bosTau2\|chr7 (27008427-27008272)
	5-160, gnl\|Hg17\|chr5 (180597329-180597169)
	5-160, gnl\|Mm7\|chr11 (48762294-48762448)

	8-119, gnl\|bosTau2\|chr21 (26242325-26242431)
	8-119, gnl\|Hg17\|chr5 (180597705-180597215)
	8-119, gnl\|Mm7\|chr11 (48762297-48762408)

	300-563, gnl\|bosTau2\|chr7 (27008134-27007858)
	300-563, gnl\|Hg17\|chr5 (180597003-180596579)
	300-563, gnl\|Mm7\|chr11 (48762558-48762802)