Non-Coding RNA Search

Ss1.1-rspl38_e22.5

Sequence:


               
               ACATCAGCAGCCAGGTGGGTACCTGCCGGCATACTACATCTCCCAACACCACTCAGAAAC
CAGGAAGTACATACATATATATGTGCAAAATATATGTGTTCGTGGCAAGAGCAAGTAGGA
GCAAAAGATCTACAACTGAGGATAATGTTCAACTGTCTATGGGAAAGTAAGTTTAAACTC
CCAGTTTATGTGACCACAAGTTGATTTTGCCCCCCCCACACACACACACAAAATGTTGTG
GGTTATTAAGTTTCCTCCTAGCTGTTAACCTTTGGAGTTCTTATACATTAGATGTCTCAA
CAAGAATATCTGGGCTCCTCCTTTTTTATTTCAGCACTCAAAAATAAGCTTTCTGCAATC
TGGAAACCCTTTTTACTTGATCGTATTTGTTATTATTTAGAGCAGTCCAGACTTCGCCTT
TTGTTTGCATACTGGTACTTCAGATTGAGGGAGTCAGTAAAAACAGTATGGTACTGCTTC
TATGACAAATATCAGTGCCTTAACAATGTGGCTGTCTTTTTCCACTGAAAAAGGAAAGAC
ATTTTGATCTAGAAACGGCATTGCTATTTATTACTGTTGGTTTCACAATGCCTTCCAATT
TGCAACAGCAACTCAGTGTTTCCTGTGGTCCCAGAAATTTTCAAGAGGTTGAGCTGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCAGCAGCCAGGTGGGTACCTGCCGGCATACTACATCTCCCAACACCACTCAGAAAC
CAGGAAGTACATACATATATATGTGCAAAATATATGTGTTCGTGGCAAGAGCAAGTAGGA
GCAAAAGATCTACAACTGAGGATAATGTTCAACTGTCTATGGGAAAGTAAGTTTAAACTC
CCAGTTTATGTGACCACAAGTTGATTTTGCCCCCCCCACACACACACACAAAATGTTGTG
GGTTATTAAGTTTCCTCCTAGCTGTTAACCTTTGGAGTTCTTATACATTAGATGTCTCAA
CAAGAATATCTGGGCTCCTCCTTTTTTATTTCAGCACTCAAAAATAAGCTTTCTGCAATC
TGGAAACCCTTTTTACTTGATCGTATTTGTTATTATTTAGAGCAGTCCAGACTTCGCCTT
TTGTTTGCATACTGGTACTTCAGATTGAGGGAGTCAGTAAAAACAGTATGGTACTGCTTC
TATGACAAATATCAGTGCCTTAACAATGTGGCTGTCTTTTTCCACTGAAAAAGGAAAGAC
ATTTTGATCTAGAAACGGCATTGCTATTTATTACTGTTGGTTTCACAATGCCTTCCAATT
TGCAACAGCAACTCAGTGTTTCCTGTGGTCCCAGAAATTTTCAAGAGGTTGAGCTGAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               454-624, - strand, RNAz p=0.985847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               454-624, - strand, RNAz p=0.985847

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               252-660, gnl|bosTau2|chr10 (10452343-10452757)
               

               
               252-660, gnl|Hg17|chr15 (67350278-67350689)
               

               
               252-660, gnl|Mm7|chr9 (62085277-62084810)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               252-660, gnl|bosTau2|chr10 (10452343-10452757)
               

               
               252-660, gnl|Hg17|chr15 (67350278-67350689)
               

               
               252-660, gnl|Mm7|chr9 (62085277-62084810)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               bla (0.124347)

	252-660, gnl\|bosTau2\|chr10 (10452343-10452757)
	252-660, gnl\|Hg17\|chr15 (67350278-67350689)
	252-660, gnl\|Mm7\|chr9 (62085277-62084810)