Non-Coding RNA Search

Ss1.1-rspl38_k12.5

Sequence:


               
               GCTAGTTATTTCTTCACTGTACATTGAGACACAGCACTACTGCACACCAAAGTATGCAAT
ACCCAAAGGAAACTGTGTGATTTCTTTTAACAAATGATGGGAGCCTTTCTATATGAGATA
CTCTGAAAAGGAGATTTTGAGGCCATTCTAATCCCTTGTTTACATTATTAGCTTCCTACT
AATATAAAAATAATGGAAATCTTTTTTGATAAAAATATAAAGACTGGAGGATTTTTAAAC
CCCTGTACAGTATTGCAGCAAACACTTTAAATTTGGTTGAATTCGTCCAGCGAACTTTCT
GGGGTTCATATATTGCACTAAATTTGTTGAACCTGTGGTAGGCACATCTCTTAGGATAAA
TGCAACCAATACAGTCCACAGATTAAACTTTTTAAATGTGTTTCATTATGAAAAGACAAA
ATGTCATCAAAGTGACAGATAAAATTGTCTTATGTAGCAATGTGCATTGATCTCAATGAG
ATATTTCTATTTCTTATTCTCTTACATGAGAATATTACAGCAGGAAGAATTAAGTTTAGT
TTGCTTCACCATGTTAATACATGATCACAAAATGTGCATGAGTGTTATTGACTTATCTTG
TACAGTACTAGGTATTCCTGTAACCACTTTTTTTTTTTCTTGGCTGTATTGAAACTGGTT
CAGTGTTAACCAGACAAGCATAGTTATTCACAGGTTATTTACTTTTTTATGTTTACTAAT
TCTGCTTAGTTATTGTTGAATATGTTCTTTTCTCAGATTATTTTCATTGTTTTGATGTTT
TAAACATTTTGCATACTGTTTATCATGATAAGACTTCATGAAGTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGTTATTTCTTCACTGTACATTGAGACACAGCACTACTGCACACCAAAGTATGCAAT
ACCCAAAGGAAACTGTGTGATTTCTTTTAACAAATGATGGGAGCCTTTCTATATGAGATA
CTCTGAAAAGGAGATTTTGAGGCCATTCTAATCCCTTGTTTACATTATTAGCTTCCTACT
AATATAAAAATAATGGAAATCTTTTTTGATAAAAATATAAAGACTGGAGGATTTTTAAAC
CCCTGTACAGTATTGCAGCAAACACTTTAAATTTGGTTGAATTCGTCCAGCGAACTTTCT
GGGGTTCATATATTGCACTAAATTTGTTGAACCTGTGGTAGGCACATCTCTTAGGATAAA
TGCAACCAATACAGTCCACAGATTAAACTTTTTAAATGTGTTTCATTATGAAAAGACAAA
ATGTCATCAAAGTGACAGATAAAATTGTCTTATGTAGCAATGTGCATTGATCTCAATGAG
ATATTTCTATTTCTTATTCTCTTACATGAGAATATTACAGCAGGAAGAATTAAGTTTAGT
TTGCTTCACCATGTTAATACATGATCACAAAATGTGCATGAGTGTTATTGACTTATCTTG
TACAGTACTAGGTATTCCTGTAACCACTTTTTTTTTTTCTTGGCTGTATTGAAACTGGTT
CAGTGTTAACCAGACAAGCATAGTTATTCACAGGTTATTTACTTTTTTATGTTTACTAAT
TCTGCTTAGTTATTGTTGAATATGTTCTTTTCTCAGATTATTTTCATTGTTTTGATGTTT
TAAACATTTTGCATACTGTTTATCATGATAAGACTTCATGAAGTAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-582, + strand, RNAz p=0.716094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-582, + strand, RNAz p=0.716094

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL832584, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL832584, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr10 (39421698-39420873)
               

               
               1-828, gnl|Hg17|chr15 (54171164-54170350)
               

               
               1-828, gnl|Mm7|chr9 (72654454-72655300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr10 (39421698-39420873)
               

               
               1-828, gnl|Hg17|chr15 (54171164-54170350)
               

               
               1-828, gnl|Mm7|chr9 (72654454-72655300)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               lin (0.291206)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               lin (0.291206)
               

               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)

	1-828, gnl\|bosTau2\|chr10 (39421698-39420873)
	1-828, gnl\|Hg17\|chr15 (54171164-54170350)
	1-828, gnl\|Mm7\|chr9 (72654454-72655300)

	amn (0.417711)
	lin (0.291206)
	fcc (0.197785)
	tbr (0.154178)
	lun (0.150489)
	liv (0.146284)
	spl (0.143184)
	nmm (0.132802)
	tra (0.123092)