Non-Coding RNA Search

Ss1.1-rspl39_o5.5

Sequence:


               
               TCTTAAAAGCAATGCTTAGTGACATTGGTGATAGGATGTGGCTGGGCCCCAGGGCCTTCC
CACACTCATCAGCCTCCCCTCATGTCTCTGCAGTGACAGTCGCCTGGTCCATAGAGTGGG
CAGAGCACCAAAGGACAGCATTCCATTGGTCATGTTTTCTCCAAATACACACTGACTCTG
CTACTTTAGAATTCATGTATTTTACTCAGAAATCTGAATTTCACAGTATACTTAACTAAG
CAAAGATGATACTCAAAACACTTTACTTTCTAGACCTAGGCTAGATATGTTTTAAGCTAC
AGCTCTAGTTCATTGTGATATTTATAATTGAAAGCTATGAGAATAGAAGTGTGGGTGAAG
CCATAGAACATGTTTGCTTGAAATTCGTGAGCAGGGAATATCTTATAAAGGGCCAGAAAT
AAGATGTGTGGTTCACATAGATAGTGAGCGTAACATCTGTATTAAACGTAGGAGAGAAGT
TTATAAAGGGCATTGGCAATAAACTCTTTGTTGCAGCTGTTTTCCAAGTAATGTAAATAC
TTTTTCCTGTGATTATGTATAGCCTTGGAATGGCACCTTTTAACTAACCCGTATGTGTTT
GGTTTTCAATGATTTTTTATATTCAGATGTATATATGGTGCTCACTTTTAGGATCAGCAG
TGTTGACCATTTATGCTGCATAGCTGTATCATAGCCTTATTAGTTGTGTGTGGTTGTTTG
ACCCTCTGGGTTTACGAGATGTTAGTCTGAGTGGCGTCTTACTCATTTGTTCGTAAGTGA
ATGATTGTGCATGTGTCGTATGTCATAGTATGTCGTCATGTAAAAGGGAGGGAGCAAATA
ACCATTACATTAAGATAATATTGGACCAAACGACTTACTTGCTCTAAACAGTTTCTTGTA
CCCCCTTAACCTGTCCTCAGAAGTTGCATAGAGTTGCAGTAGTGTGTAAATTAAATATTG
TGGAGAAACAATTAGTCTTGTATTTTTCTGTATGTGTGTATATGTATATATATATACATA
TATATATAAAATTATGTACTTCTGGCAATTCTGTCTGTATTTAAAATTGTGACAATCTTG
ACACCGATTTTAAGAATAGTCATGAGACTGAATCAAATTAGAGATATCCCTTCCAAGTAA
GAATTGATGTCTGTTAAGAGGGTACAGAATTATCAGCTGATTTGGTTGGTTACTTCCACT
GCTGGCTGATTTTCCTCATTGTGTAAACATTGACAGGTATGTGACAAATGGGAAAAGAAA
TCCGAATAATAAAGTGGCATATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAAAAGCAATGCTTAGTGACATTGGTGATAGGATGTGGCTGGGCCCCAGGGCCTTCC
CACACTCATCAGCCTCCCCTCATGTCTCTGCAGTGACAGTCGCCTGGTCCATAGAGTGGG
CAGAGCACCAAAGGACAGCATTCCATTGGTCATGTTTTCTCCAAATACACACTGACTCTG
CTACTTTAGAATTCATGTATTTTACTCAGAAATCTGAATTTCACAGTATACTTAACTAAG
CAAAGATGATACTCAAAACACTTTACTTTCTAGACCTAGGCTAGATATGTTTTAAGCTAC
AGCTCTAGTTCATTGTGATATTTATAATTGAAAGCTATGAGAATAGAAGTGTGGGTGAAG
CCATAGAACATGTTTGCTTGAAATTCGTGAGCAGGGAATATCTTATAAAGGGCCAGAAAT
AAGATGTGTGGTTCACATAGATAGTGAGCGTAACATCTGTATTAAACGTAGGAGAGAAGT
TTATAAAGGGCATTGGCAATAAACTCTTTGTTGCAGCTGTTTTCCAAGTAATGTAAATAC
TTTTTCCTGTGATTATGTATAGCCTTGGAATGGCACCTTTTAACTAACCCGTATGTGTTT
GGTTTTCAATGATTTTTTATATTCAGATGTATATATGGTGCTCACTTTTAGGATCAGCAG
TGTTGACCATTTATGCTGCATAGCTGTATCATAGCCTTATTAGTTGTGTGTGGTTGTTTG
ACCCTCTGGGTTTACGAGATGTTAGTCTGAGTGGCGTCTTACTCATTTGTTCGTAAGTGA
ATGATTGTGCATGTGTCGTATGTCATAGTATGTCGTCATGTAAAAGGGAGGGAGCAAATA
ACCATTACATTAAGATAATATTGGACCAAACGACTTACTTGCTCTAAACAGTTTCTTGTA
CCCCCTTAACCTGTCCTCAGAAGTTGCATAGAGTTGCAGTAGTGTGTAAATTAAATATTG
TGGAGAAACAATTAGTCTTGTATTTTTCTGTATGTGTGTATATGTATATATATATACATA
TATATATAAAATTATGTACTTCTGGCAATTCTGTCTGTATTTAAAATTGTGACAATCTTG
ACACCGATTTTAAGAATAGTCATGAGACTGAATCAAATTAGAGATATCCCTTCCAAGTAA
GAATTGATGTCTGTTAAGAGGGTACAGAATTATCAGCTGATTTGGTTGGTTACTTCCACT
GCTGGCTGATTTTCCTCATTGTGTAAACATTGACAGGTATGTGACAAATGGGAAAAGAAA
TCCGAATAATAAAGTGGCATATTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               330-448, + strand, RNAz p=0.646353

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-448, + strand, RNAz p=0.646353

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017719, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017719, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1284, gnl|bosTau2|chr22 (13754189-13752901)
               

               
               1-1284, gnl|Hg17|chr3 (43366357-43367622)
               

               
               1-1284, gnl|Mm7|chr9 (121876300-121877473)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1284, gnl|bosTau2|chr22 (13754189-13752901)
               

               
               1-1284, gnl|Hg17|chr3 (43366357-43367622)
               

               
               1-1284, gnl|Mm7|chr9 (121876300-121877473)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               clu (0.478583)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-1284, gnl\|bosTau2\|chr22 (13754189-13752901)
	1-1284, gnl\|Hg17\|chr3 (43366357-43367622)
	1-1284, gnl\|Mm7\|chr9 (121876300-121877473)

	clu (0.478583)
	fat (0.442282)
	liv (0.438853)
	lin (0.436808)
	bla (0.248694)
	cbe (0.239234)
	spc (0.226732)
	fli (0.202881)
	fcc (0.197785)
	fco (0.157208)
	tbr (0.154178)
	spl (0.143184)
	kid (0.129735)
	thg (0.126791)
	eru (0.120048)
	jca (0.11396)