Non-Coding RNA Search

Ss1.1-rspl40_c9.5

Sequence:


               
               CTCTGAGGGTGTCAGTCACATCAGCAGCGGGGAGGTTGTGCTCACTCCAGGACCCTGAGC
ACAGATGGCTTGTCGACATCCTATGCTGACCCCTGGCCTTTCAGAAGCCGATGGTCCCAC
TCTGAGCCACTTTCTGTGCTGTTTAGAACTGTGAGCATGGATGGAAGGGCCACTCGCCCA
CCCTTTTCATGCCTGGAGAGCCCAGGAAATGTGAAGATGACCAGACTGGGCTGAACCCGT
GTCCAAAGCTTGGTCTCAGGCAGCACTTCCATCCCCACCCCACTTCATGTCACGTGGGGA
AACTGAGGCTCAGGGAGGACACTGCTCTTTGTGGCCTTGCTTTGGGCCCCTTAAACTATG
AGACACCTCTTCCCAGTTTGAAGAAGTACCTTCTCAGACTGTTCTCCATTTTTAAGTTGT
TCTTTCCCTGTGCTTGATGGAAAACAGTGGCACGTGGGCTTGTCTGCTAGCACACAGGCC
TTTACGAGACAGAAGGAAGAAACACCCGAAAGAAGAAACTAATGGCACACGGAACGGCTA
ATGTGAATATTTGGAAGCGAAGCACCTGAACCTGTCCGATTGGAGGACTTATTTAGTTCA
AGGGCATGCATGCTTGTGGGTGTGGTTTCTTACTGCAGCCGGCAAACAGCAGCCCTTTCC
CTAACACTAACGCTGCCCTGGAATGAAGCATAATGTGTCCCTCGCGGAATTCCGTAAAGA
GCTCAGAGGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGAGGGTGTCAGTCACATCAGCAGCGGGGAGGTTGTGCTCACTCCAGGACCCTGAGC
ACAGATGGCTTGTCGACATCCTATGCTGACCCCTGGCCTTTCAGAAGCCGATGGTCCCAC
TCTGAGCCACTTTCTGTGCTGTTTAGAACTGTGAGCATGGATGGAAGGGCCACTCGCCCA
CCCTTTTCATGCCTGGAGAGCCCAGGAAATGTGAAGATGACCAGACTGGGCTGAACCCGT
GTCCAAAGCTTGGTCTCAGGCAGCACTTCCATCCCCACCCCACTTCATGTCACGTGGGGA
AACTGAGGCTCAGGGAGGACACTGCTCTTTGTGGCCTTGCTTTGGGCCCCTTAAACTATG
AGACACCTCTTCCCAGTTTGAAGAAGTACCTTCTCAGACTGTTCTCCATTTTTAAGTTGT
TCTTTCCCTGTGCTTGATGGAAAACAGTGGCACGTGGGCTTGTCTGCTAGCACACAGGCC
TTTACGAGACAGAAGGAAGAAACACCCGAAAGAAGAAACTAATGGCACACGGAACGGCTA
ATGTGAATATTTGGAAGCGAAGCACCTGAACCTGTCCGATTGGAGGACTTATTTAGTTCA
AGGGCATGCATGCTTGTGGGTGTGGTTTCTTACTGCAGCCGGCAAACAGCAGCCCTTTCC
CTAACACTAACGCTGCCCTGGAATGAAGCATAATGTGTCCCTCGCGGAATTCCGTAAAGA
GCTCAGAGGCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               194-346, + strand, RNAz p=0.930275
               

               
               227-346, - strand, RNAz p=0.992488

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-346, + strand, RNAz p=0.930275
               

               
               227-346, - strand, RNAz p=0.992488

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX649023, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX649023, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-503, gnl|bosTau2|chr8 (43804679-43804179)
               

               
               3-503, gnl|canFam2|chr11 (71820942-71821825)
               

               
               3-503, gnl|dasNov1|scaffold_209039 (1103-234)
               

               
               3-503, gnl|echTel1|scaffold_289262 (39913-40813)
               

               
               3-503, gnl|hg17|chr9 (114484772-114485708)
               

               
               3-503, gnl|Hg17|chr9 (114485262-114485788)
               

               
               3-503, gnl|loxAfr1|scaffold_13038 (8805-9796)
               

               
               3-503, gnl|mm7|chr4 (63017296-63018087)
               

               
               3-503, gnl|oryCun1|scaffold_214303 (476265-477030)
               

               
               3-503, gnl|panTro1|chr11 (99020593-99021529)
               

               
               3-503, gnl|rheMac2|chr15 (21483949-21483015)
               

               
               3-503, gnl|rn3|chr5 (80557897-80558693)
               


               
               559-732, gnl|bosTau2|chr8 (43804152-43803982)
               

               
               559-732, gnl|Hg17|chr9 (114485821-114485995)
               

               
               559-732, gnl|Mm7|chr4 (63018218-63018381)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-503, gnl|bosTau2|chr8 (43804679-43804179)
               

               
               3-503, gnl|canFam2|chr11 (71820942-71821825)
               

               
               3-503, gnl|dasNov1|scaffold_209039 (1103-234)
               

               
               3-503, gnl|echTel1|scaffold_289262 (39913-40813)
               

               
               3-503, gnl|hg17|chr9 (114484772-114485708)
               

               
               3-503, gnl|Hg17|chr9 (114485262-114485788)
               

               
               3-503, gnl|loxAfr1|scaffold_13038 (8805-9796)
               

               
               3-503, gnl|mm7|chr4 (63017296-63018087)
               

               
               3-503, gnl|oryCun1|scaffold_214303 (476265-477030)
               

               
               3-503, gnl|panTro1|chr11 (99020593-99021529)
               

               
               3-503, gnl|rheMac2|chr15 (21483949-21483015)
               

               
               3-503, gnl|rn3|chr5 (80557897-80558693)
               


               
               559-732, gnl|bosTau2|chr8 (43804152-43803982)
               

               
               559-732, gnl|Hg17|chr9 (114485821-114485995)
               

               
               559-732, gnl|Mm7|chr4 (63018218-63018381)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.143184)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	194-346, + strand, RNAz p=0.930275
	227-346, - strand, RNAz p=0.992488

	3-503, gnl\|bosTau2\|chr8 (43804679-43804179)
	3-503, gnl\|canFam2\|chr11 (71820942-71821825)
	3-503, gnl\|dasNov1\|scaffold_209039 (1103-234)
	3-503, gnl\|echTel1\|scaffold_289262 (39913-40813)
	3-503, gnl\|hg17\|chr9 (114484772-114485708)
	3-503, gnl\|Hg17\|chr9 (114485262-114485788)
	3-503, gnl\|loxAfr1\|scaffold_13038 (8805-9796)
	3-503, gnl\|mm7\|chr4 (63017296-63018087)
	3-503, gnl\|oryCun1\|scaffold_214303 (476265-477030)
	3-503, gnl\|panTro1\|chr11 (99020593-99021529)
	3-503, gnl\|rheMac2\|chr15 (21483949-21483015)
	3-503, gnl\|rn3\|chr5 (80557897-80558693)

	559-732, gnl\|bosTau2\|chr8 (43804152-43803982)
	559-732, gnl\|Hg17\|chr9 (114485821-114485995)
	559-732, gnl\|Mm7\|chr4 (63018218-63018381)