Non-Coding RNA Search

Ss1.1-rspl40_j12.5

Sequence:


               
               CCCAGACGCCGACCCGGGCCTCGTCGGAGTGGAGCTCCCATCCAAGCCTAAGGAGCGTGT
GGCCGCCCCACGGAGGGACGTGCCCAAGGTGCTGCATGACAGCAGCAAGGATGGCATCAC
TGTGTTTGTCAGCAACCTGCCCTACAGCCTGGAGGAGCCGGCCACTGTGCTCCGCCCCCT
CTTTGAGGCTTGTGGGGACGTGGTTGAGATCCGCCCCATCTTCAGCAACCGAGGCGACTT
CCGGGGCTACTGCTATGTGGAGTTCAAAGAGGAGGCGGCGGCCCAGCGGGCGCTGGAGCT
GGACCGGAAGAGCGTAGAGGGGCGGCCCATGTTCGTTTCTCCCTGTGTGGACAAGAGCAA
AAACCCAGATTTCAAGGTGTTCAGGTACAGCACTGCCCTGGAGAAGCACAAGCTGTTCAT
CTCAGGGCTTCCGTTCTCCTGCACCAGAGAGGAGCTAGAGGAGATCTGCAAGGCCCACGG
CACCGTGAAGGACATCAGGCTGGTTACCAACCGGGCCGGCAAACCCAAGGGCCTGGCCTA
CGTGGAGTACGAAAATGAATCCCAGGCGTCGCAGGCCGTCCTCAAGATGGACGGCATGAC
TGTCAAAGAGAACATCATCAAAGTGGCCATCAGCAACCCGCCTCAGAGGAAGTTTCCAGA
GAAGCCAGAGGCAAGGAAAGCCCCAGGAGGCCCCCTGGTGCCGCGGCAGATCTACGGAGC
GCGGGGAAAAGGGAGGACCCAGCTCTCTCTGCTGCCTAGGGCCCTGCAGCGCCCTGGCGC
CCCCAGCGGCCCAGGCTGAGAATGGTCCTGCGCCACCACCAGCAGGTGCCACCCCGGCGG
CCACTGAGGCACCCAAGATGTCCAATGCGGATTTTGCCAAGTTGCTTCTGAGAAAGTGAG
TGGAACAGAGAGAGAAGGGAAATGCCTTACTTCGTGCCCAGGAAATGCCTGGTGCCCTGC
TGGGCCCTGGCTGTGCGGCCCTGTGCCCATGCTTCCTCTGTACACGTGGGACGGGGGAAA
GGTGTCCAAGGAAAGAGGCTTTAAGTGCTCCCTCATATTGAGGGCGAGAGATCGAAAACG
ATCACTCCACAGGCTGGGCACAGGGTGTAGTTTCCTAAGATATTTTTGTGTCTTAAAGAG
TGAGAAACAGAAGTGAAACTCAAACACACTGTTTTGAGACCCACTTGTCCAAATATTTTT
GGCCAACTCTGGTCCCTTTTTATAAGACACTTCTCTTACACCCTGCACAGCACATGTGCC
CGTCACTCTTGTAATTTTTAAAAGACAAAATGGCAGATGCTAGTAATTCACCAGAATGGC
CTATTTTAGTAAAGGGGTGGGGAGAGAGGACATCACATGAGAAACAACTGATGGATTTGT
GTTCTAGGGGGCTGTGCATTTTTATATTATGTATTTGTAAATGACACGTCAACCCATTGT
TTTGTTTCCTAAAAGCAGAATATTTGTGACATTTGTTTTGTATAGGAATTCTACCCGCCA
TCTGCTATGGACCATTTTCTTTGTCTAGTAGCTAGTGAACTGTGTTCTTTGTCTAAATAT
TGAGTTTCAGCCCTTTGGTTTTGTTTAAATACCATGTCAAGTGCAAACTTAAATTCTCTC
CATTTAGCTTTGTTTATTAAACTGAAGTTCTCTTAAAAACTTGCTGAATGGTACTAAGAT
GTGCATTCAAATATGTATTTTGAAATGGGTGTACCCTGCTTTACCTAATAGCTGTGTAAA
TAGAACTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACGCCGACCCGGGCCTCGTCGGAGTGGAGCTCCCATCCAAGCCTAAGGAGCGTGT
GGCCGCCCCACGGAGGGACGTGCCCAAGGTGCTGCATGACAGCAGCAAGGATGGCATCAC
TGTGTTTGTCAGCAACCTGCCCTACAGCCTGGAGGAGCCGGCCACTGTGCTCCGCCCCCT
CTTTGAGGCTTGTGGGGACGTGGTTGAGATCCGCCCCATCTTCAGCAACCGAGGCGACTT
CCGGGGCTACTGCTATGTGGAGTTCAAAGAGGAGGCGGCGGCCCAGCGGGCGCTGGAGCT
GGACCGGAAGAGCGTAGAGGGGCGGCCCATGTTCGTTTCTCCCTGTGTGGACAAGAGCAA
AAACCCAGATTTCAAGGTGTTCAGGTACAGCACTGCCCTGGAGAAGCACAAGCTGTTCAT
CTCAGGGCTTCCGTTCTCCTGCACCAGAGAGGAGCTAGAGGAGATCTGCAAGGCCCACGG
CACCGTGAAGGACATCAGGCTGGTTACCAACCGGGCCGGCAAACCCAAGGGCCTGGCCTA
CGTGGAGTACGAAAATGAATCCCAGGCGTCGCAGGCCGTCCTCAAGATGGACGGCATGAC
TGTCAAAGAGAACATCATCAAAGTGGCCATCAGCAACCCGCCTCAGAGGAAGTTTCCAGA
GAAGCCAGAGGCAAGGAAAGCCCCAGGAGGCCCCCTGGTGCCGCGGCAGATCTACGGAGC
GCGGGGAAAAGGGAGGACCCAGCTCTCTCTGCTGCCTAGGGCCCTGCAGCGCCCTGGCGC
CCCCAGCGGCCCAGGCTGAGAATGGTCCTGCGCCACCACCAGCAGGTGCCACCCCGGCGG
CCACTGAGGCACCCAAGATGTCCAATGCGGATTTTGCCAAGTTGCTTCTGAGAAAGTGAG
TGGAACAGAGAGAGAAGGGAAATGCCTTACTTCGTGCCCAGGAAATGCCTGGTGCCCTGC
TGGGCCCTGGCTGTGCGGCCCTGTGCCCATGCTTCCTCTGTACACGTGGGACGGGGGAAA
GGTGTCCAAGGAAAGAGGCTTTAAGTGCTCCCTCATATTGAGGGCGAGAGATCGAAAACG
ATCACTCCACAGGCTGGGCACAGGGTGTAGTTTCCTAAGATATTTTTGTGTCTTAAAGAG
TGAGAAACAGAAGTGAAACTCAAACACACTGTTTTGAGACCCACTTGTCCAAATATTTTT
GGCCAACTCTGGTCCCTTTTTATAAGACACTTCTCTTACACCCTGCACAGCACATGTGCC
CGTCACTCTTGTAATTTTTAAAAGACAAAATGGCAGATGCTAGTAATTCACCAGAATGGC
CTATTTTAGTAAAGGGGTGGGGAGAGAGGACATCACATGAGAAACAACTGATGGATTTGT
GTTCTAGGGGGCTGTGCATTTTTATATTATGTATTTGTAAATGACACGTCAACCCATTGT
TTTGTTTCCTAAAAGCAGAATATTTGTGACATTTGTTTTGTATAGGAATTCTACCCGCCA
TCTGCTATGGACCATTTTCTTTGTCTAGTAGCTAGTGAACTGTGTTCTTTGTCTAAATAT
TGAGTTTCAGCCCTTTGGTTTTGTTTAAATACCATGTCAAGTGCAAACTTAAATTCTCTC
CATTTAGCTTTGTTTATTAAACTGAAGTTCTCTTAAAAACTTGCTGAATGGTACTAAGAT
GTGCATTCAAATATGTATTTTGAAATGGGTGTACCCTGCTTTACCTAATAGCTGTGTAAA
TAGAACTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50798285|ref|XP_428340.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50798285|ref|XP_428340.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1484-1750, gnl|bosTau2|chr13 (28315091-28315365)
               

               
               1484-1750, gnl|Hg17|chr12 (107419090-107418831)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1484-1750, gnl|bosTau2|chr13 (28315091-28315365)
               

               
               1484-1750, gnl|Hg17|chr12 (107419090-107418831)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               mgp (0.461361)
               

               
               nmm (0.398406)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               nmm (0.398406)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               lnt (0.284616)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1484-1750, gnl\|bosTau2\|chr13 (28315091-28315365)
	1484-1750, gnl\|Hg17\|chr12 (107419090-107418831)

	mgp (0.461361)
	nmm (0.398406)
	vin (0.332557)
	nco (0.323468)
	lnt (0.284616)
	ret (0.257467)
	thg (0.253582)
	spc (0.226732)
	cty (0.20816)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	spl (0.143184)
	hlv (0.139256)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	jca (0.11396)
	ldo (0.0970026)