Non-Coding RNA Search

Ss1.1-rspl40_k17.5

Sequence:


               
               GTAAGTTGACAGATGTTTTTCAGTAACTAACTAGGAGATACCACCTGAATCCTACTGAGT
CTTGGGTAGCCCTCATTGGAGATGCACTTAGGCCCCTGGAATCTTTAAGCACCTGTAAGG
GGTGCTACAGACATTTAAATCTCTTACTTACTAAAGGATTATCTTTCAGAAATTGATGTC
CCCACAGAATTTATTGTTACCAGTTAGATGAACTGACTTAGCTGTCTTGGAAGAGAAGCT
TTAGGGAAATCATCAGGTGTGTACTCAGTTATTTCAAAGAAGAAAATCAGATCGTAACTT
TGGGAAAAAATTGATTTAAGCTGTCTTTTTTCCTGTGCAAATCAAAGCTAGCACAAGCAG
TCATGCATAGAACAGAAATGTAACCGTTGTCTTGACTACCTTACCGAAGTGTTTGGGCAT
GGAAGTTTTTAGTCTATCAGTATAAAATTGAGGGAAGCCAAGTACAGGGGATGGGTAAGT
TTAGAGCTTTGGGAATTGTAAATGCCTTTTGTAACTTTTGTTCTGTAGGTTACCTATGAA
CCATTAGGAATGATCTGCCTTGGTTGGCAGGTCTCTGGTTTAGGAATTAGGTTTACTATA
AATTTCTGGCTGCATCGGAGTCTTCCGGGATAGGTGCTTTCTGACTGGTCTTGGCTGCAG
GTGGTGTGTGCGATCAGAGCAGCCTGTCCTGCTGTCTGGCCTCTTTTACACTGAGAGGTG
AGCTCAGATAACTTTGGACATTCTTACTAAGGAGTAGTAAGATTAAAAAAAATTATCGAA
GTATAGTTAATTTACAGTGAGAAGTGGGTAAGATTTTAATAACATGATCACATTTTTGAA
ATTCAGATCATGAGTGTGAAATTCCCAAATTTACATAAAGATGTATGTACAATTTAATAT
TTGGTATTAAAGGAAGTCGTAGCAGCTTTTGATGTTTCTTAATCCCCATTAGAGGGCTTG
AGACCTGAACAACCCAGTTAAAGCACTCGGAGAGTGTTTTTGATGCCTTCGAAACAGGAA
AAAATTTTTGTTTGACAAAAGCTAGGAAGGAAGAAAATCCATTCTGTAGCTGTTAGATCT
GCTTCTCAGGAAAAAGTACTTTTTCTTTTTGTTCCTAGCTTTCCTCAGTTTGTGAGATTA
CTCTATTTTTTTAAATATAATTTTATTTCTTTCAATGAATTTGAAATAAAAAAAAAAAAC
ACTTTGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAGTTGACAGATGTTTTTCAGTAACTAACTAGGAGATACCACCTGAATCCTACTGAGT
CTTGGGTAGCCCTCATTGGAGATGCACTTAGGCCCCTGGAATCTTTAAGCACCTGTAAGG
GGTGCTACAGACATTTAAATCTCTTACTTACTAAAGGATTATCTTTCAGAAATTGATGTC
CCCACAGAATTTATTGTTACCAGTTAGATGAACTGACTTAGCTGTCTTGGAAGAGAAGCT
TTAGGGAAATCATCAGGTGTGTACTCAGTTATTTCAAAGAAGAAAATCAGATCGTAACTT
TGGGAAAAAATTGATTTAAGCTGTCTTTTTTCCTGTGCAAATCAAAGCTAGCACAAGCAG
TCATGCATAGAACAGAAATGTAACCGTTGTCTTGACTACCTTACCGAAGTGTTTGGGCAT
GGAAGTTTTTAGTCTATCAGTATAAAATTGAGGGAAGCCAAGTACAGGGGATGGGTAAGT
TTAGAGCTTTGGGAATTGTAAATGCCTTTTGTAACTTTTGTTCTGTAGGTTACCTATGAA
CCATTAGGAATGATCTGCCTTGGTTGGCAGGTCTCTGGTTTAGGAATTAGGTTTACTATA
AATTTCTGGCTGCATCGGAGTCTTCCGGGATAGGTGCTTTCTGACTGGTCTTGGCTGCAG
GTGGTGTGTGCGATCAGAGCAGCCTGTCCTGCTGTCTGGCCTCTTTTACACTGAGAGGTG
AGCTCAGATAACTTTGGACATTCTTACTAAGGAGTAGTAAGATTAAAAAAAATTATCGAA
GTATAGTTAATTTACAGTGAGAAGTGGGTAAGATTTTAATAACATGATCACATTTTTGAA
ATTCAGATCATGAGTGTGAAATTCCCAAATTTACATAAAGATGTATGTACAATTTAATAT
TTGGTATTAAAGGAAGTCGTAGCAGCTTTTGATGTTTCTTAATCCCCATTAGAGGGCTTG
AGACCTGAACAACCCAGTTAAAGCACTCGGAGAGTGTTTTTGATGCCTTCGAAACAGGAA
AAAATTTTTGTTTGACAAAAGCTAGGAAGGAAGAAAATCCATTCTGTAGCTGTTAGATCT
GCTTCTCAGGAAAAAGTACTTTTTCTTTTTGTTCCTAGCTTTCCTCAGTTTGTGAGATTA
CTCTATTTTTTTAAATATAATTTTATTTCTTTCAATGAATTTGAAATAAAAAAAAAAAAC
ACTTTGGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               465-659, + strand, RNAz p=0.856048
               

               
               1033-1129, - strand, RNAz p=0.579615

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-659, + strand, RNAz p=0.856048
               

               
               1033-1129, - strand, RNAz p=0.579615

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001806, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001806, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-776, gnl|bosTau2|chr18 (36672472-36673260)
               

               
               1-776, gnl|Hg17|chr19 (38564264-38565039)
               

               
               1-776, gnl|Mm7|chr7 (31937591-31936891)
               


               
               800-1212, gnl|bosTau2|chr18 (36673234-36673660)
               

               
               800-1212, gnl|canFam2|chr1 (121688612-121687534)
               

               
               800-1212, gnl|dasNov1|scaffold_21773 (5271-4201)
               

               
               800-1212, gnl|echTel1|scaffold_55923 (1306-2380)
               

               
               800-1212, gnl|hg17|chr19 (38564506-38565604)
               

               
               800-1212, gnl|Hg17|chr19 (38565013-38565429)
               

               
               800-1212, gnl|loxAfr1|scaffold_127227 (4419-5506)
               

               
               800-1212, gnl|mm7|chr7 (31937358-31936368)
               

               
               800-1212, gnl|Mm7|chr7 (31936908-31936506)
               

               
               800-1212, gnl|monDom2|scaffold_35 (2769204-2768122)
               

               
               800-1212, gnl|oryCun1|scaffold_204160 (72880-71875)
               

               
               800-1212, gnl|panTro1|chr20 (35078207-35079308)
               

               
               800-1212, gnl|rheMac2|chr19 (39905720-39906815)
               

               
               800-1212, gnl|rn3|chr1 (87629655-87628668)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-776, gnl|bosTau2|chr18 (36672472-36673260)
               

               
               1-776, gnl|Hg17|chr19 (38564264-38565039)
               

               
               1-776, gnl|Mm7|chr7 (31937591-31936891)
               


               
               800-1212, gnl|bosTau2|chr18 (36673234-36673660)
               

               
               800-1212, gnl|canFam2|chr1 (121688612-121687534)
               

               
               800-1212, gnl|dasNov1|scaffold_21773 (5271-4201)
               

               
               800-1212, gnl|echTel1|scaffold_55923 (1306-2380)
               

               
               800-1212, gnl|hg17|chr19 (38564506-38565604)
               

               
               800-1212, gnl|Hg17|chr19 (38565013-38565429)
               

               
               800-1212, gnl|loxAfr1|scaffold_127227 (4419-5506)
               

               
               800-1212, gnl|mm7|chr7 (31937358-31936368)
               

               
               800-1212, gnl|Mm7|chr7 (31936908-31936506)
               

               
               800-1212, gnl|monDom2|scaffold_35 (2769204-2768122)
               

               
               800-1212, gnl|oryCun1|scaffold_204160 (72880-71875)
               

               
               800-1212, gnl|panTro1|chr20 (35078207-35079308)
               

               
               800-1212, gnl|rheMac2|chr19 (39905720-39906815)
               

               
               800-1212, gnl|rn3|chr1 (87629655-87628668)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               spl (0.286369)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               cbl (0.114797)

	465-659, + strand, RNAz p=0.856048
	1033-1129, - strand, RNAz p=0.579615

	1-776, gnl\|bosTau2\|chr18 (36672472-36673260)
	1-776, gnl\|Hg17\|chr19 (38564264-38565039)
	1-776, gnl\|Mm7\|chr7 (31937591-31936891)

	800-1212, gnl\|bosTau2\|chr18 (36673234-36673660)
	800-1212, gnl\|canFam2\|chr1 (121688612-121687534)
	800-1212, gnl\|dasNov1\|scaffold_21773 (5271-4201)
	800-1212, gnl\|echTel1\|scaffold_55923 (1306-2380)
	800-1212, gnl\|hg17\|chr19 (38564506-38565604)
	800-1212, gnl\|Hg17\|chr19 (38565013-38565429)
	800-1212, gnl\|loxAfr1\|scaffold_127227 (4419-5506)
	800-1212, gnl\|mm7\|chr7 (31937358-31936368)
	800-1212, gnl\|Mm7\|chr7 (31936908-31936506)
	800-1212, gnl\|monDom2\|scaffold_35 (2769204-2768122)
	800-1212, gnl\|oryCun1\|scaffold_204160 (72880-71875)
	800-1212, gnl\|panTro1\|chr20 (35078207-35079308)
	800-1212, gnl\|rheMac2\|chr19 (39905720-39906815)
	800-1212, gnl\|rn3\|chr1 (87629655-87628668)

	spl (0.286369)
	ece (0.229305)
	nep (0.183925)
	fty (0.17584)
	fhi (0.169578)
	nco (0.161734)
	liv (0.146284)
	lnt (0.142308)
	nca (0.136874)
	cbl (0.114797)