Non-Coding RNA Search

Ss1.1-rspl40_k9.5

Sequence:


               
               TGCATTAGGAGACAAAATCGATAGTTTTAACTCCCTTTACATGCTAGTCAAAATGAGTCA
TCATGTGTGGACTGCCCAAAATGTGGACCCTGCCTCTTTTCTGAGTACTACATTGGGAAA
TGTTTTGGTGACTGTCAAAAGGAACTTTGACAAATGTATTAGTAACCAGATAAGGCAAAT
GGAAGAAGTAAAGATCTCAAAGAAGAGTAAAGTAGGAATTCTTCCATTTGTGGCTGAATT
TGAAGAATTTGCTGGACTTGCAGAATCGATCTTTAAAAATGCTGAGCGTCGTGGAGACCT
AGATAAAGCATATACTAAACTTATCAGAGGGGTGTTTGTTAACGTGGAGAAAGTGGCCAA
CGAAAGCCAGAAGACGCCCAGGGATGTAGTCATGATGGAAAACTTTCACCATATTTTTGC
AACACTTTCTCGTTTGAAAATCTCATGTCTAGAAGCTGAAAAAAAAGAAGCCAAACAAAA
ATACACAGACCACCTTCAGTCTTACGTCATTTACTCTTTAGGACAACCTCTTGAAAAGCT
AAATCATTTCTTTGAAGGTGTTGAAGCTCGGGTAGCACAGGGTATAAGAGAGGAGGAAGT
AAGCTATCAGCTTGCATTTAACAAGCAGGAGCTCCGGAAAGTTATCAGAGAGTATCCTGG
GAAGGAGGTGAAAAAAGGCCTGGACAACCTCTACAAGAAGGTCGATAAGCACCTGTGCGA
AGAGGAGAACCTACTGCAGGTCGTGTGGCACTCCATGCAGGACGAATTTATCCGCCAGTA
CAAGCATTTTGAAGGTTTGATAGCGCGCTGTTACCCCGGATCTGGTGTTACAATGGAATT
CACCATTCAGGACATTCTGGATTATTGCTCTAGCATTGCACAGTCCCACTAGCCCTCATA
AAAGAAGAAAGATAAATGAAAAAGGCACCCTGCGTACACCAGACACTATTCAGAAATATC
AAGCAACTATTTTGAGAACCCAGACTTGAAATTTTATGTGTTACTTAAGTGTCGTAAATG
GAGAATATCATACCACAAATATTCAGGAATGAAAGTACCAACCTATGTAGTAGTTTTATT
TGCCCAATAGGTTGTGTACTAACTTAAAGCATTTATGTCAGCATAAATGCCTTTAGCATT
TTTCTATGCCTAAACCAGAAACCTTCCTTTAATGCCTTGCTTCTTGTATTTGAGAGTGGT
TATCCTTTGTCGAATGCATTGGGTGTTCTTCAGTTTTCACTAGTGCAGCATCACTTGGAA
ACCATGCAACTACTAAAATACATATAGAATTTTTTCCCTTTGCCTAATGTGCGTATGCAT
AGGGATCTTGTGATGTAAACCTGGATCACTTGTAAACATGGATTTTGAGGATTATGTGAC
TATAGCTATGAATCTGAAATAAAGAGATTTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATTAGGAGACAAAATCGATAGTTTTAACTCCCTTTACATGCTAGTCAAAATGAGTCA
TCATGTGTGGACTGCCCAAAATGTGGACCCTGCCTCTTTTCTGAGTACTACATTGGGAAA
TGTTTTGGTGACTGTCAAAAGGAACTTTGACAAATGTATTAGTAACCAGATAAGGCAAAT
GGAAGAAGTAAAGATCTCAAAGAAGAGTAAAGTAGGAATTCTTCCATTTGTGGCTGAATT
TGAAGAATTTGCTGGACTTGCAGAATCGATCTTTAAAAATGCTGAGCGTCGTGGAGACCT
AGATAAAGCATATACTAAACTTATCAGAGGGGTGTTTGTTAACGTGGAGAAAGTGGCCAA
CGAAAGCCAGAAGACGCCCAGGGATGTAGTCATGATGGAAAACTTTCACCATATTTTTGC
AACACTTTCTCGTTTGAAAATCTCATGTCTAGAAGCTGAAAAAAAAGAAGCCAAACAAAA
ATACACAGACCACCTTCAGTCTTACGTCATTTACTCTTTAGGACAACCTCTTGAAAAGCT
AAATCATTTCTTTGAAGGTGTTGAAGCTCGGGTAGCACAGGGTATAAGAGAGGAGGAAGT
AAGCTATCAGCTTGCATTTAACAAGCAGGAGCTCCGGAAAGTTATCAGAGAGTATCCTGG
GAAGGAGGTGAAAAAAGGCCTGGACAACCTCTACAAGAAGGTCGATAAGCACCTGTGCGA
AGAGGAGAACCTACTGCAGGTCGTGTGGCACTCCATGCAGGACGAATTTATCCGCCAGTA
CAAGCATTTTGAAGGTTTGATAGCGCGCTGTTACCCCGGATCTGGTGTTACAATGGAATT
CACCATTCAGGACATTCTGGATTATTGCTCTAGCATTGCACAGTCCCACTAGCCCTCATA
AAAGAAGAAAGATAAATGAAAAAGGCACCCTGCGTACACCAGACACTATTCAGAAATATC
AAGCAACTATTTTGAGAACCCAGACTTGAAATTTTATGTGTTACTTAAGTGTCGTAAATG
GAGAATATCATACCACAAATATTCAGGAATGAAAGTACCAACCTATGTAGTAGTTTTATT
TGCCCAATAGGTTGTGTACTAACTTAAAGCATTTATGTCAGCATAAATGCCTTTAGCATT
TTTCTATGCCTAAACCAGAAACCTTCCTTTAATGCCTTGCTTCTTGTATTTGAGAGTGGT
TATCCTTTGTCGAATGCATTGGGTGTTCTTCAGTTTTCACTAGTGCAGCATCACTTGGAA
ACCATGCAACTACTAAAATACATATAGAATTTTTTCCCTTTGCCTAATGTGCGTATGCAT
AGGGATCTTGTGATGTAAACCTGGATCACTTGTAAACATGGATTTTGAGGATTATGTGAC
TATAGCTATGAATCTGAAATAAAGAGATTTTCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61834833|ref|XP_580567.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834833|ref|XP_580567.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-165, gnl|bosTau2|chr6 (38675067-38674904)
               

               
               1-165, gnl|Hg17|chr4 (56600715-56600877)
               

               
               1-165, gnl|Mm7|chr5 (76493684-76493847)
               


               
               335-543, gnl|bosTau2|chr6 (38668608-38668400)
               

               
               335-543, gnl|Hg17|chr4 (56606769-56606977)
               

               
               335-543, gnl|Mm7|chr5 (76499270-76499478)
               


               
               738-1013, gnl|bosTau2|chr6 (38663526-38663250)
               

               
               738-1013, gnl|Hg17|chr4 (56611435-56611709)
               

               
               738-1013, gnl|Mm7|chr5 (76501939-76502208)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr6 (38675067-38674904)
               

               
               1-165, gnl|Hg17|chr4 (56600715-56600877)
               

               
               1-165, gnl|Mm7|chr5 (76493684-76493847)
               


               
               335-543, gnl|bosTau2|chr6 (38668608-38668400)
               

               
               335-543, gnl|Hg17|chr4 (56606769-56606977)
               

               
               335-543, gnl|Mm7|chr5 (76499270-76499478)
               


               
               738-1013, gnl|bosTau2|chr6 (38663526-38663250)
               

               
               738-1013, gnl|Hg17|chr4 (56611435-56611709)
               

               
               738-1013, gnl|Mm7|chr5 (76501939-76502208)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               thg (0.380373)
               

               
               tra (0.369276)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               kid (0.259471)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               cty (0.10408)

	1-165, gnl\|bosTau2\|chr6 (38675067-38674904)
	1-165, gnl\|Hg17\|chr4 (56600715-56600877)
	1-165, gnl\|Mm7\|chr5 (76493684-76493847)

	335-543, gnl\|bosTau2\|chr6 (38668608-38668400)
	335-543, gnl\|Hg17\|chr4 (56606769-56606977)
	335-543, gnl\|Mm7\|chr5 (76499270-76499478)

	738-1013, gnl\|bosTau2\|chr6 (38663526-38663250)
	738-1013, gnl\|Hg17\|chr4 (56611435-56611709)
	738-1013, gnl\|Mm7\|chr5 (76501939-76502208)

	thg (0.380373)
	tra (0.369276)
	kid (0.259471)
	gul (0.177588)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	fco (0.157208)
	eli (0.151814)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	cty (0.10408)