Non-Coding RNA Search

Ss1.1-rspl40_n16.5

Sequence:


               
               TTGTGAGTATATCCTTGTTGACATCACATGTGCTTCCCAGCTTTGGAGTTATAAGGTGTT
GGTGGGAGGTGATTCACTCTCCCTCTTCGTAAGAAAGAGCAGAAGTTCAGCAGAGTTAAC
TGAGGTCTACCCGCCACCACTCGTCTGGTTTGTTATGGAGTTGAATATCTCTCCCCTTTC
TATTCTTTGAAATGTTTTGAATTAAAATAGCTTACTCAAGGTTACTGAAGGCATATGGTC
CTGCTCAAAACTTTAAACAAAACATTAGTTTTTACAACCTTTTGTAATTTGGTCTTGTAT
ACAACATGGTTATATGCGGAGTTTCTGTAATCTTTTCAGTGGGTGACAGAAATATGAGAA
GCAAATTTATAAGCCATTTAGTGAAGCATTTAATCAATTTCATGCATAAGAAATAACCCC
AATTGCTTTGCTTTATCAGTCTTTCTCTCCAGGAGAACTGCAGTCAACATGATCTCCAAA
CAGTGGCTGGGGGTGGAGGTGGGAGCTCAGGGGGTCGAGGAGAGCGGGGACAGTGTGGGA
CGGTTTGCGAGGAAACCTCAGGATGCACTTCAGTGTCAGGGCCTTCTGAAGTCTGCCTAA
CAGGGTTGCCAGCATCCCTGAGACTTCTGGAGGCTGTTAATGTATTTCAGAAAGCAAGCA
TGGGGGTCTAATGTTTAGAAGAAGTTTTCAAGGCCTTTTACTGCAAAGTTATTCATTAAA
CACCCTTTTCCCAGAGTGACTCTCATGTGCTCAGCATGGCAGATGCTTCAACTTTAGGCT
CAAAGAAATAGTCAGTGGTAATTTCTTTCAAACACATGAAAAAATAAAACGACTTACATG
AGAACTTACTTCTGAGACTTACAGAGTCGAAGCAAGGTGATCAAAATAACTGAAAATCCA
CTAAAGTGGATTGTTAGGAGGAGAGATATTTGAGCATTTTTCAGAATACCTGAATTGTTC
ATGTTCTGACTCTCTCTTTCTTTTTCAAACTTAATTTGAACTGCCTAAAAGATTCATCTG
GCTCTTGGCTACATAATAGGTTAATATTTTCCTTTCTGTCATGTGCTAGAATCCCTCTTA
TAACACTTTACCCCAAACACCATCAAGTTCTTAAGTGAAAAAGTCCTACGGGAGCAAAAA
AAGTTCTTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGAGTATATCCTTGTTGACATCACATGTGCTTCCCAGCTTTGGAGTTATAAGGTGTT
GGTGGGAGGTGATTCACTCTCCCTCTTCGTAAGAAAGAGCAGAAGTTCAGCAGAGTTAAC
TGAGGTCTACCCGCCACCACTCGTCTGGTTTGTTATGGAGTTGAATATCTCTCCCCTTTC
TATTCTTTGAAATGTTTTGAATTAAAATAGCTTACTCAAGGTTACTGAAGGCATATGGTC
CTGCTCAAAACTTTAAACAAAACATTAGTTTTTACAACCTTTTGTAATTTGGTCTTGTAT
ACAACATGGTTATATGCGGAGTTTCTGTAATCTTTTCAGTGGGTGACAGAAATATGAGAA
GCAAATTTATAAGCCATTTAGTGAAGCATTTAATCAATTTCATGCATAAGAAATAACCCC
AATTGCTTTGCTTTATCAGTCTTTCTCTCCAGGAGAACTGCAGTCAACATGATCTCCAAA
CAGTGGCTGGGGGTGGAGGTGGGAGCTCAGGGGGTCGAGGAGAGCGGGGACAGTGTGGGA
CGGTTTGCGAGGAAACCTCAGGATGCACTTCAGTGTCAGGGCCTTCTGAAGTCTGCCTAA
CAGGGTTGCCAGCATCCCTGAGACTTCTGGAGGCTGTTAATGTATTTCAGAAAGCAAGCA
TGGGGGTCTAATGTTTAGAAGAAGTTTTCAAGGCCTTTTACTGCAAAGTTATTCATTAAA
CACCCTTTTCCCAGAGTGACTCTCATGTGCTCAGCATGGCAGATGCTTCAACTTTAGGCT
CAAAGAAATAGTCAGTGGTAATTTCTTTCAAACACATGAAAAAATAAAACGACTTACATG
AGAACTTACTTCTGAGACTTACAGAGTCGAAGCAAGGTGATCAAAATAACTGAAAATCCA
CTAAAGTGGATTGTTAGGAGGAGAGATATTTGAGCATTTTTCAGAATACCTGAATTGTTC
ATGTTCTGACTCTCTCTTTCTTTTTCAAACTTAATTTGAACTGCCTAAAAGATTCATCTG
GCTCTTGGCTACATAATAGGTTAATATTTTCCTTTCTGTCATGTGCTAGAATCCCTCTTA
TAACACTTTACCCCAAACACCATCAAGTTCTTAAGTGAAAAAGTCCTACGGGAGCAAAAA
AAGTTCTTAAGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-1148, gnl|bosTau2|chr21 (5676200-5675071)
               

               
               15-1148, gnl|Hg17|chr15 (94606678-94605576)
               

               
               15-1148, gnl|Mm7|chr7 (66289223-66290297)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1148, gnl|bosTau2|chr21 (5676200-5675071)
               

               
               15-1148, gnl|Hg17|chr15 (94606678-94605576)
               

               
               15-1148, gnl|Mm7|chr7 (66289223-66290297)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ova (0.129132)

	15-1148, gnl\|bosTau2\|chr21 (5676200-5675071)
	15-1148, gnl\|Hg17\|chr15 (94606678-94605576)
	15-1148, gnl\|Mm7\|chr7 (66289223-66290297)