Non-Coding RNA Search

Ss1.1-rspl40_n4.5

Sequence:


               
               AAACACCTTTCCTGGGCTTTGAATCTACTAGTACTCAGTGATACAACCAGAAGAGTGACT
AAGTATATCATACAGGTTCTTCAGTAAAATATATCATTTTCAGGTTATAGTTGTGCCTAT
ATGGCCTCTGGCAGAACTATTAATCAGTTGAAGAGGTTAAGCGTGATATGAATGATAGAC
CAGAACTTTGAGATTGTACATTAATGTTAAAAGCTGAAATAACATTTTATAAAACCTTAT
GGTGCTACAGAAAATATTTATTATTTCACTTTTTCTGGTACTTCACCATGGAAACTATTC
AGGTAATGTAGTTTTAAGTCGTTGCAGTTAATATCTGGTTAATTGGTATTGTTTATCACC
CAGGTGTGGAATTGTGGTTTTAGGTTTTCTCATTAATCATAGCTATAAAGATGCTAAGGG
AATTCCCCAAAGCTGAGAGATTTCATTAGTCATTTGTGCTTAGCATGTATCTCCCTAAAA
GTGAAAGCAACAGTTTAAAAAATTAATTTTCAACTTATTAAAAAAACACTTTTTAATTTC
ATGCTTTTAAAAAATGTAACAGTAAAACCTTCCTATAAGAGCAGTGAAAAGTGGCTAGAA
TTTCCTCCATAGGTTTCTCCCATTGAGTAGAATACTTCAGATTCATCTTCAAGCTCCCAG
ACTGTCATGAAGGGAATGTGAATGTTGGGGTTTGGTGTACTCTGGTGGCTAGACTCATCA
GCTTTTTCTTTATTTCTACCTCTGTCAGCAGCAACCACCCTACCCACCAGGTTCTGCTGT
TACTCTAAGAGATAGGAAGTGTCCTGTCACTTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACACCTTTCCTGGGCTTTGAATCTACTAGTACTCAGTGATACAACCAGAAGAGTGACT
AAGTATATCATACAGGTTCTTCAGTAAAATATATCATTTTCAGGTTATAGTTGTGCCTAT
ATGGCCTCTGGCAGAACTATTAATCAGTTGAAGAGGTTAAGCGTGATATGAATGATAGAC
CAGAACTTTGAGATTGTACATTAATGTTAAAAGCTGAAATAACATTTTATAAAACCTTAT
GGTGCTACAGAAAATATTTATTATTTCACTTTTTCTGGTACTTCACCATGGAAACTATTC
AGGTAATGTAGTTTTAAGTCGTTGCAGTTAATATCTGGTTAATTGGTATTGTTTATCACC
CAGGTGTGGAATTGTGGTTTTAGGTTTTCTCATTAATCATAGCTATAAAGATGCTAAGGG
AATTCCCCAAAGCTGAGAGATTTCATTAGTCATTTGTGCTTAGCATGTATCTCCCTAAAA
GTGAAAGCAACAGTTTAAAAAATTAATTTTCAACTTATTAAAAAAACACTTTTTAATTTC
ATGCTTTTAAAAAATGTAACAGTAAAACCTTCCTATAAGAGCAGTGAAAAGTGGCTAGAA
TTTCCTCCATAGGTTTCTCCCATTGAGTAGAATACTTCAGATTCATCTTCAAGCTCCCAG
ACTGTCATGAAGGGAATGTGAATGTTGGGGTTTGGTGTACTCTGGTGGCTAGACTCATCA
GCTTTTTCTTTATTTCTACCTCTGTCAGCAGCAACCACCCTACCCACCAGGTTCTGCTGT
TACTCTAAGAGATAGGAAGTGTCCTGTCACTTTGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-312, - strand, RNAz p=0.666939
               

               
               701-814, + strand, RNAz p=0.781683

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, - strand, RNAz p=0.666939
               

               
               701-814, + strand, RNAz p=0.781683

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR749604, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR749604, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-814, gnl|bosTau2|chr3 (16014279-16013485)
               

               
               1-814, gnl|Hg17|chr15 (49083012-49083830)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr3 (16014279-16013485)
               

               
               1-814, gnl|Hg17|chr15 (49083012-49083830)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spl (0.143184)

	193-312, - strand, RNAz p=0.666939
	701-814, + strand, RNAz p=0.781683

	1-814, gnl\|bosTau2\|chr3 (16014279-16013485)
	1-814, gnl\|Hg17\|chr15 (49083012-49083830)