Non-Coding RNA Search

Ss1.1-rssp02_a7.5

Sequence:


               
               CTTTGTGTAAAGCTGGTGGTTTTTGTTTCTTTTTGGCAAGCAGTAGTTATTGCTTTGTTG
GTAAAAGTTGGCGTTATTTCTGAAAAGCACACGTGGGAATGGCAAACTGTAGAAGCTGTG
GCCACAGGACTCCAGGACTTTATTATCTGTATTGAGATGTTCCTTGCTGCTATTGCTCAT
CACTACACTTTCTCATATAAACCATACGTCCAAGAAGCAGAAGAGGGCTCATGCTTTGAT
TCCTTTCTTGCCATGTGGGATGTTTCAGATATTAGGGATGACATTTCCGAACAAGTGAGG
CATGTTGGAAGGACAGTCATGGGACATCCTAGGAAAAAATTTTTTCCTGAGGATCAAGAT
CAAAATGAACACACAAGCTTGTTGTCATCATCATCACAAGATGCAATTTCCGTTGCCTCT
TCCGTGCCACCTTCACCCATGGGTCACTATCAAGGGTTTGGACACACTGTGACTCCCCAA
GCTACACCCACTGCCGCAGATGTATCTGATGAAATATGTAATGATATCACAGGAGAGAAA
AAGCCTTCAGATAAGTCTGTAGCCTCCTGAACAGTGTGCAAATGCAGACTGTGCTACAGC
CTTGTGATTTCATTACCTGGTACCCATTGCTCAGGATTTTATGCTTGGGACAAGCCACTA
ATGACGAAAAATTTCACCACAAAGATAGGCGAAAACCAGGTACAACTACTGGATTTATGC
AACTAAGTTTTATATATCACAAATAATCAGTCTAAATATCTTAGACTCAGACTTGACTTC
TTAACACTATAGAGTATGACATACTCAAATGGTAGAAAATGACTACTAAACGTTCCTGAC
ACTACAATGCTTTATCAAGAGGATGGACAAAAAAAAAAAAAAAAAAAATCAGTGCTTTCT
ACCACTGCTGCATGAATATACTGCTCTGGAATTAGGAGGAAGTGTAATTCAGAAATAAGA
AATAGTGGAATTTAATCATAATCATGTGCCATATATGCCTACCTAACAATTATTTCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGTGTAAAGCTGGTGGTTTTTGTTTCTTTTTGGCAAGCAGTAGTTATTGCTTTGTTG
GTAAAAGTTGGCGTTATTTCTGAAAAGCACACGTGGGAATGGCAAACTGTAGAAGCTGTG
GCCACAGGACTCCAGGACTTTATTATCTGTATTGAGATGTTCCTTGCTGCTATTGCTCAT
CACTACACTTTCTCATATAAACCATACGTCCAAGAAGCAGAAGAGGGCTCATGCTTTGAT
TCCTTTCTTGCCATGTGGGATGTTTCAGATATTAGGGATGACATTTCCGAACAAGTGAGG
CATGTTGGAAGGACAGTCATGGGACATCCTAGGAAAAAATTTTTTCCTGAGGATCAAGAT
CAAAATGAACACACAAGCTTGTTGTCATCATCATCACAAGATGCAATTTCCGTTGCCTCT
TCCGTGCCACCTTCACCCATGGGTCACTATCAAGGGTTTGGACACACTGTGACTCCCCAA
GCTACACCCACTGCCGCAGATGTATCTGATGAAATATGTAATGATATCACAGGAGAGAAA
AAGCCTTCAGATAAGTCTGTAGCCTCCTGAACAGTGTGCAAATGCAGACTGTGCTACAGC
CTTGTGATTTCATTACCTGGTACCCATTGCTCAGGATTTTATGCTTGGGACAAGCCACTA
ATGACGAAAAATTTCACCACAAAGATAGGCGAAAACCAGGTACAACTACTGGATTTATGC
AACTAAGTTTTATATATCACAAATAATCAGTCTAAATATCTTAGACTCAGACTTGACTTC
TTAACACTATAGAGTATGACATACTCAAATGGTAGAAAATGACTACTAAACGTTCCTGAC
ACTACAATGCTTTATCAAGAGGATGGACAAAAAAAAAAAAAAAAAAAATCAGTGCTTTCT
ACCACTGCTGCATGAATATACTGCTCTGGAATTAGGAGGAAGTGTAATTCAGAAATAAGA
AATAGTGGAATTTAATCATAATCATGTGCCATATATGCCTACCTAACAATTATTTCTCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q969I7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q969I7_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               20-136, gnl|bosTau2|chr17 (5556726-5556842)
               

               
               20-136, gnl|Hg17|chr4 (148911643-148911759)
               

               
               20-136, gnl|Mm7|chr8 (76142312-76142196)
               


               
               307-1020, gnl|bosTau2|chr17 (5557749-5558439)
               

               
               307-1020, gnl|Hg17|chr4 (148912924-148913933)
               

               
               307-1020, gnl|Mm7|chr8 (76140824-76139642)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-136, gnl|bosTau2|chr17 (5556726-5556842)
               

               
               20-136, gnl|Hg17|chr4 (148911643-148911759)
               

               
               20-136, gnl|Mm7|chr8 (76142312-76142196)
               


               
               307-1020, gnl|bosTau2|chr17 (5557749-5558439)
               

               
               307-1020, gnl|Hg17|chr4 (148912924-148913933)
               

               
               307-1020, gnl|Mm7|chr8 (76140824-76139642)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               cbe (0.717703)
               

               
               sug (0.636456)
               

               
               tra (0.61546)
               

               
               spc (0.453463)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               sug (0.636456)
               

               
               tra (0.61546)
               

               
               spc (0.453463)
               

               
               sto (0.359648)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	20-136, gnl\|bosTau2\|chr17 (5556726-5556842)
	20-136, gnl\|Hg17\|chr4 (148911643-148911759)
	20-136, gnl\|Mm7\|chr8 (76142312-76142196)

	307-1020, gnl\|bosTau2\|chr17 (5557749-5558439)
	307-1020, gnl\|Hg17\|chr4 (148912924-148913933)
	307-1020, gnl\|Mm7\|chr8 (76140824-76139642)

	cbe (0.717703)
	sug (0.636456)
	tra (0.61546)
	spc (0.453463)
	sto (0.359648)
	vin (0.332557)
	fat (0.294855)
	lin (0.291206)
	ssp (0.271039)
	lyg (0.266205)
	kid (0.259471)
	pan (0.23596)
	cmu (0.186393)
	sag (0.182715)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	csk (0.140746)
	ova (0.129132)
	ret (0.128733)
	eep (0.122564)
	clu (0.119646)
	pgl (0.118483)
	jej (0.0989218)