Ss1.1-rssp02_e17.5
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AGCTCTTTTTTTATTTACTAAATAGATTTCAGGCACATGATGATTTTAAGCTAGGAGTCA
AATGGAGCTGGTTTGTTTGGTGTGGCTTCACATCCTTGGGTCATGTGTGAAAATACATCC
TTTTAGCTCTCCAGGTGCAGCTGAAGCCAGGAAGGTTGAGCTATTTATCTTATGTTTATA
TCCCTCTCACCTTAATTGGAGCCATTTTCCTAGCAGCCCTCGAGCAAGTGAGAAAGAAGG
GGAAAGGAGGATGGGTATCTCAGGGAATCAGGGAACAAAGAATTTAGCCAACAACAGCAA
AAAAAGAGTCTAATCAATAGGAATGTTTGTTACTGCCTGGGTCTCCCTTTGAACACGGTC
CAGAGTTGGTGTAGATGAAGTAGATGGTATCCCCCCAAGAAGGGTCAAGAAGGCATTCGA
GCAAGTCCCAGAGGGGAAGTATGCTCGTCTTTTGTTGTAATGTGCCACTTGGTACTATTC
AGTAATGTAATTCTATTGTCCCTAATCCTTATTGTTTGGTTTATATATTTCACATTTGTA
TATAAGGCACCATTTCTGAAAATATAACTAGAGTGTGAGCTAAGATTTTATTCAGGGAAG
ATGAGTAACTGCAACAACTAAATACTGAAGTGGGAAGAAGGAAGAGTTCTCCAGGGATCA
GCTCCATGTGTTTTGAATCTAGTCCTTCCCATATGGAGAAAGAAATCTCTGGCAGTTCAT
TCCAGTTTCTTTGTCTCTTACTAGACAAAGAAAGCAAGGGGCGCTGTCGTCCAAGGGAGA
TGAAAATTCGGGGCTACCGTGAGGTGAATAACAAGTAAGGGAAAAGGAAGAGAGCAGAGG
GCTTTTTCTTGATAGCCTGGGCAGCCAAGCGTTCAGGAGGGCAGTCACAAGAATGACCAC
AATGCCCTGTGGGGCCCCACACTTTACTTTCCCAGTTGCTGCCTTCAGTGCAATAGAGTT
GATACTACAGGTATCCACTGGTCTAGGAAAACAAGCCCATTTTACGGTGGGAGGGAATTT
GGAGCAAAAGGGAAGCCTTTTAGAGAGATGGTGGATTAGACAGAAGAGGATTTGCTTTGT
GAGATGAAGCTGCTGTAAGCAGCACGAGCAGCGAGCAGCGAGCATTATCTGATGGAGGCA
AAACAGCTAGACACAGCTTCAGATTAAGAGCAGCAGAGGGAAGTGAAAGGGGACTGTGGG
CCCAAGAAGAGGAGCCTGGACGGGGTAATATCTGTGAGCCGAGCCCTTGGGGAGTATCAC
CACCAAGAAAGTGAGTCCCAGCAGAGATCAGCTGAATGTGTCTATAGAATGGAGGCAGAA
AAGACTTTGTTGCCTTAATAGTATGGGGATCTGTCTTATAAAGAAAGGAAAAGTGAAAAG
TATGGTGGAACTTGGAGATGTAAGAAGAAAACCACTGCAAAATATGATCTATGTGTGATG
TCCAATGAACTGAAGAATGAAATTGTGTATATCTATGGTGACATACCTCTGTATGCTGGA
AACCCCAGTGTCCCTAAGAGGCAGAAATAAAAGCTGTTTTGCACTCTGAAAAAAAAAAAA
GGTGAATCTTGTAAGTGAGGGGTA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AGCTCTTTTTTTATTTACTAAATAGATTTCAGGCACATGATGATTTTAAGCTAGGAGTCA
AATGGAGCTGGTTTGTTTGGTGTGGCTTCACATCCTTGGGTCATGTGTGAAAATACATCC
TTTTAGCTCTCCAGGTGCAGCTGAAGCCAGGAAGGTTGAGCTATTTATCTTATGTTTATA
TCCCTCTCACCTTAATTGGAGCCATTTTCCTAGCAGCCCTCGAGCAAGTGAGAAAGAAGG
GGAAAGGAGGATGGGTATCTCAGGGAATCAGGGAACAAAGAATTTAGCCAACAACAGCAA
AAAAAGAGTCTAATCAATAGGAATGTTTGTTACTGCCTGGGTCTCCCTTTGAACACGGTC
CAGAGTTGGTGTAGATGAAGTAGATGGTATCCCCCCAAGAAGGGTCAAGAAGGCATTCGA
GCAAGTCCCAGAGGGGAAGTATGCTCGTCTTTTGTTGTAATGTGCCACTTGGTACTATTC
AGTAATGTAATTCTATTGTCCCTAATCCTTATTGTTTGGTTTATATATTTCACATTTGTA
TATAAGGCACCATTTCTGAAAATATAACTAGAGTGTGAGCTAAGATTTTATTCAGGGAAG
ATGAGTAACTGCAACAACTAAATACTGAAGTGGGAAGAAGGAAGAGTTCTCCAGGGATCA
GCTCCATGTGTTTTGAATCTAGTCCTTCCCATATGGAGAAAGAAATCTCTGGCAGTTCAT
TCCAGTTTCTTTGTCTCTTACTAGACAAAGAAAGCAAGGGGCGCTGTCGTCCAAGGGAGA
TGAAAATTCGGGGCTACCGTGAGGTGAATAACAAGTAAGGGAAAAGGAAGAGAGCAGAGG
GCTTTTTCTTGATAGCCTGGGCAGCCAAGCGTTCAGGAGGGCAGTCACAAGAATGACCAC
AATGCCCTGTGGGGCCCCACACTTTACTTTCCCAGTTGCTGCCTTCAGTGCAATAGAGTT
GATACTACAGGTATCCACTGGTCTAGGAAAACAAGCCCATTTTACGGTGGGAGGGAATTT
GGAGCAAAAGGGAAGCCTTTTAGAGAGATGGTGGATTAGACAGAAGAGGATTTGCTTTGT
GAGATGAAGCTGCTGTAAGCAGCACGAGCAGCGAGCAGCGAGCATTATCTGATGGAGGCA
AAACAGCTAGACACAGCTTCAGATTAAGAGCAGCAGAGGGAAGTGAAAGGGGACTGTGGG
CCCAAGAAGAGGAGCCTGGACGGGGTAATATCTGTGAGCCGAGCCCTTGGGGAGTATCAC
CACCAAGAAAGTGAGTCCCAGCAGAGATCAGCTGAATGTGTCTATAGAATGGAGGCAGAA
AAGACTTTGTTGCCTTAATAGTATGGGGATCTGTCTTATAAAGAAAGGAAAAGTGAAAAG
TATGGTGGAACTTGGAGATGTAAGAAGAAAACCACTGCAAAATATGATCTATGTGTGATG
TCCAATGAACTGAAGAATGAAATTGTGTATATCTATGGTGACATACCTCTGTATGCTGGA
AACCCCAGTGTCCCTAAGAGGCAGAAATAAAAGCTGTTTTGCACTCTGAAAAAAAAAAAA
GGTGAATCTTGTAAGTGAGGGGTA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
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10-323, gnl|bosTau2|chr1 (40561212-40561523) |
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10-323, gnl|canFam2|chr33 (27940207-27940435) |
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10-323, gnl|dasNov1|scaffold_40097 (2981-2815) |
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10-323, gnl|echTel1|scaffold_289205 (84259-84497) |
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10-323, gnl|fr1|chrUn (170889414-170889629) |
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10-323, gnl|hg17|chr3 (122830279-122830514) |
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10-323, gnl|Hg17|chr3 (122830279-122830682) |
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10-323, gnl|mm7|chr16 (36673630-36673399) |
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10-323, gnl|Mm7|chr16 (36673628-36673312) |
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10-323, gnl|oryCun1|scaffold_211323 (89552-89323) |
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10-323, gnl|panTro1|chr2 (124521568-124521801) |
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10-323, gnl|rheMac2|chr2 (41605750-41605985) |
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10-323, gnl|rn3|chr11 (65671250-65671480) |
| |
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409-920, gnl|bosTau2|chr1 (40561521-40562031) |
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409-920, gnl|Hg17|chr3 (122830596-122831201) |
| |
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963-1580, gnl|bosTau2|chr1 (40562148-40562763) |
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963-1580, gnl|Hg17|chr3 (122831274-122831861) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-323, gnl|bosTau2|chr1 (40561212-40561523) |
|
10-323, gnl|canFam2|chr33 (27940207-27940435) |
|
10-323, gnl|dasNov1|scaffold_40097 (2981-2815) |
|
10-323, gnl|echTel1|scaffold_289205 (84259-84497) |
|
10-323, gnl|fr1|chrUn (170889414-170889629) |
|
10-323, gnl|hg17|chr3 (122830279-122830514) |
|
10-323, gnl|Hg17|chr3 (122830279-122830682) |
|
10-323, gnl|mm7|chr16 (36673630-36673399) |
|
10-323, gnl|Mm7|chr16 (36673628-36673312) |
|
10-323, gnl|oryCun1|scaffold_211323 (89552-89323) |
|
10-323, gnl|panTro1|chr2 (124521568-124521801) |
|
10-323, gnl|rheMac2|chr2 (41605750-41605985) |
|
10-323, gnl|rn3|chr11 (65671250-65671480) |
| |
|
409-920, gnl|bosTau2|chr1 (40561521-40562031) |
|
409-920, gnl|Hg17|chr3 (122830596-122831201) |
| |
|
963-1580, gnl|bosTau2|chr1 (40562148-40562763) |
|
963-1580, gnl|Hg17|chr3 (122831274-122831861) |
|
hlv (0.974795) |
|
vin (0.665115) |
|
hea (0.613497) |
|
sme (0.610874) |
|
ldo (0.485013) |
|
che (0.408942) |
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ssp (0.406559) |
|
tbr (0.308356) |
|
ste (0.270416) |
|
nms (0.213858) |
|
fbs (0.175346) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
thg (0.126791) |
|
hlv (0.974795) |
|
vin (0.665115) |
|
hea (0.613497) |
|
sme (0.610874) |
|
ldo (0.485013) |
|
che (0.408942) |
|
ssp (0.406559) |
|
tbr (0.308356) |
|
ste (0.270416) |
|
nms (0.213858) |
|
fbs (0.175346) |
|
fat (0.147427) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
thg (0.126791) |
