Ss1.1-rssp03_f16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCTGTGCATTTTCACCTAATGGAAACCTCTTTGTCACTGGCTCTTCATGTGGAGATTT AACAGTGTGGGATGATAAAATGAGGTGTCTGCATGATGAAAAAGCACACGATCTTGGAAT CACATGCTGCGATTTTTCTCCACAACCAGTTTCTGATGGAGAACAAGGTCTTCAGTTTTT CCGATTGGCATCATGTGGTCAGGATTGCCACATGAAAATTTGGATGATTTCTTTTACCCA CATTTTAGGTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCT GGCTTGTGCTTTTTCTCACAATGGGCAGATGCTAGTCTCAGGATCAGTGGATAAGTCTGT CATTGTGTATGATACTAATACTGAGAATATACTTTACACCTTGACTCAGCACACCAGGTA CGTCACAACTTGTGCCTTTGCACCCAGTATCCTTTTACTTGCTACTGGTTCAATGGACAA AACAGTGAACATCTGGCAGTTTGACCCAGGAGCACTTTGCCAAGCAAGGATCCCAGAAGA TCAACCAGAGCAATTTGTCGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCTGTGCATTTTCACCTAATGGAAACCTCTTTGTCACTGGCTCTTCATGTGGAGATTT AACAGTGTGGGATGATAAAATGAGGTGTCTGCATGATGAAAAAGCACACGATCTTGGAAT CACATGCTGCGATTTTTCTCCACAACCAGTTTCTGATGGAGAACAAGGTCTTCAGTTTTT CCGATTGGCATCATGTGGTCAGGATTGCCACATGAAAATTTGGATGATTTCTTTTACCCA CATTTTAGGTTTTGAATTAAAATATAAAAGTACACTGAGTGGGCACTGTGCTCCTGTTCT GGCTTGTGCTTTTTCTCACAATGGGCAGATGCTAGTCTCAGGATCAGTGGATAAGTCTGT CATTGTGTATGATACTAATACTGAGAATATACTTTACACCTTGACTCAGCACACCAGGTA CGTCACAACTTGTGCCTTTGCACCCAGTATCCTTTTACTTGCTACTGGTTCAATGGACAA AACAGTGAACATCTGGCAGTTTGACCCAGGAGCACTTTGCCAAGCAAGGATCCCAGAAGA TCAACCAGAGCAATTTGTCGAAGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.527006 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.527006 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 5-108, + strand, RNAmicro p=0.999448 |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chr2 (10689705-10689859) | |
| 1-155, gnl|Hg17|chr2 (159961933-159961779) | |
| 1-155, gnl|Mm7|chr2 (59807370-59807216) | |
| 247-357, gnl|bosTau2|chr2 (10702739-10702850) | |
| 247-357, gnl|Hg17|chr2 (159953815-159953699) | |
| 247-357, gnl|Mm7|chr2 (59803860-59803753) | |
| 413-524, gnl|bosTau2|chr2 (10716087-10716198) | |
| 413-524, gnl|Hg17|chr2 (159939887-159939776) | |
| 413-524, gnl|Mm7|chr2 (59793280-59793169) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chr2 (10689705-10689859) | |
| 1-155, gnl|Hg17|chr2 (159961933-159961779) | |
| 1-155, gnl|Mm7|chr2 (59807370-59807216) | |
| 247-357, gnl|bosTau2|chr2 (10702739-10702850) | |
| 247-357, gnl|Hg17|chr2 (159953815-159953699) | |
| 247-357, gnl|Mm7|chr2 (59803860-59803753) | |
| 413-524, gnl|bosTau2|chr2 (10716087-10716198) | |
| 413-524, gnl|Hg17|chr2 (159939887-159939776) | |
| 413-524, gnl|Mm7|chr2 (59793280-59793169) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.13552) | |
| cty (0.10408) |