Non-Coding RNA Search

Ss1.1-rssp03_g11.5

Sequence:


               
               TTTTTTTTTTAAAAACAAAACAAAACAGATAAAGAGCCTGATGCCCAGAAAGATAAAGTG
ACTTGGCCAAAATCACATGTTTAGTGACAGAAACAGGATTAAAACCTGGGTTGGAAGACT
GTCCAGTGCTGTGTGCCTCAGAATCAACAAATTAAGGACTGCTAATGAAGGGCAGGCACC
AGAATGACACAAAGGACAGAATTCCCTTCCCAAATGTCCTGTAGCAAAGCCTGGGAGAGC
ATGAAGACAAAGTAGGAAGCTTAGTGATCTGCTGTACATCTTCTGAGCTGTGTAGGTCTA
AGAACAATTCTTTTCTGCCAAGAAATAGTTTTGAATGAGCTTTCACATAAAGAGCTTCTA
CCAGTAGGACTAAGGATCAAAGGGAACCAGACCAGGGGGAGGCGGGGGGAGAGTAAAGGC
GTGGTGTGTTTCAACCTTGTTATTAGCTGATTCACTCGGGTTTAGTGAAAACCCAACACT
GAGTGAAAGGAGGGGATTACAGTTTGCTGTGGGTCTTTTTTTAACTTGGTGAATGTTAAA
CAGTTTGCCCGGCAGACAGGGGGAGCGTGTGTCTTAGTGGACAGGGGTCTAAAGTACACT
GGAATTTACTGAGAAACTTGTTTGTAAAAACTCTTAATTATTGCCATTTTCTTATGAAAG
TATATTTTGGGAAATTGTATACTGTCAATTAAAGTGCTTTCGTGTAAGCGGGTTCAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTAAAAACAAAACAAAACAGATAAAGAGCCTGATGCCCAGAAAGATAAAGTG
ACTTGGCCAAAATCACATGTTTAGTGACAGAAACAGGATTAAAACCTGGGTTGGAAGACT
GTCCAGTGCTGTGTGCCTCAGAATCAACAAATTAAGGACTGCTAATGAAGGGCAGGCACC
AGAATGACACAAAGGACAGAATTCCCTTCCCAAATGTCCTGTAGCAAAGCCTGGGAGAGC
ATGAAGACAAAGTAGGAAGCTTAGTGATCTGCTGTACATCTTCTGAGCTGTGTAGGTCTA
AGAACAATTCTTTTCTGCCAAGAAATAGTTTTGAATGAGCTTTCACATAAAGAGCTTCTA
CCAGTAGGACTAAGGATCAAAGGGAACCAGACCAGGGGGAGGCGGGGGGAGAGTAAAGGC
GTGGTGTGTTTCAACCTTGTTATTAGCTGATTCACTCGGGTTTAGTGAAAACCCAACACT
GAGTGAAAGGAGGGGATTACAGTTTGCTGTGGGTCTTTTTTTAACTTGGTGAATGTTAAA
CAGTTTGCCCGGCAGACAGGGGGAGCGTGTGTCTTAGTGGACAGGGGTCTAAAGTACACT
GGAATTTACTGAGAAACTTGTTTGTAAAAACTCTTAATTATTGCCATTTTCTTATGAAAG
TATATTTTGGGAAATTGTATACTGTCAATTAAAGTGCTTTCGTGTAAGCGGGTTCAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-636, - strand, RNAz p=0.915521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-636, - strand, RNAz p=0.915521

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               575-697, + strand, RNAmicro p=0.994693

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               575-697, + strand, RNAmicro p=0.994693

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               219-719, gnl|bosTau2|chr4 (52206305-52206786)
               

               
               219-719, gnl|Hg17|chr7 (130642805-130642274)
               

               
               219-719, gnl|Mm7|chr6 (31450293-31449780)
               


               
               470-707, gnl|bosTau2|chr24 (14525729-14525968)
               

               
               470-707, gnl|Hg17|chr7 (130642503-130642286)
               

               
               470-707, gnl|Mm7|chr6 (31450005-31449792)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               219-719, gnl|bosTau2|chr4 (52206305-52206786)
               

               
               219-719, gnl|Hg17|chr7 (130642805-130642274)
               

               
               219-719, gnl|Mm7|chr6 (31450293-31449780)
               


               
               470-707, gnl|bosTau2|chr24 (14525729-14525968)
               

               
               470-707, gnl|Hg17|chr7 (130642503-130642286)
               

               
               470-707, gnl|Mm7|chr6 (31450005-31449792)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)

	219-719, gnl\|bosTau2\|chr4 (52206305-52206786)
	219-719, gnl\|Hg17\|chr7 (130642805-130642274)
	219-719, gnl\|Mm7\|chr6 (31450293-31449780)

	470-707, gnl\|bosTau2\|chr24 (14525729-14525968)
	470-707, gnl\|Hg17\|chr7 (130642503-130642286)
	470-707, gnl\|Mm7\|chr6 (31450005-31449792)

	amn (0.417711)
	fbs (0.175346)
	ssp (0.13552)
	cov (0.132153)
	eru (0.120048)
	nbm (0.0993246)