Non-Coding RNA Search

Ss1.1-rssp03_j8.5

Sequence:


               
               GACAGCCAGGCNTCAAGCACAGGGTAGAGTGGTGCTGCTTCTTGGAAAAATTGAAAAAGC
TCTCTGGACGACAGGGGCCCAAAGCTGATGGCAGACAATGTCAGCCACTAACAACATAGC
CCAGGCTCGGAAGCTGGTGGAGCAGCTCCGCATCGAGGCCGGGATCGAGCGCATCAAGGT
CTCCAAAGCCTCATCTGAACTCATGAGCTACTGTGAGCAGCACGCCCGGAATGACCCCCT
GCTCGTGGGAGTCCCTGCCTCCGAGAACCCCTTTAAGGACAAGAAGCCTTGTATTATCTT
ATAGCTTTGTTTTCTTGCGCTCAACTCCTCCCCGACACCCAGCCTCCAGTCAGGGCGCCA
TTCAGTACAGAGTCCAGCAAAACTCTTAATTCCAAAAGAAATGCAAAAAGTTGCCACTGC
CCAGATGGGTTAAGATGGATCCTCTGATTTCAGATGGATTTTCAGACCCCGCAATGCAGC
CCCCTTAAGGGCCGGGCTTCTGCACCGCTTCCGATTGGAAATAACTGAAATGCCCAAGTG
GTGTGCTAACAGTTTTTGAAAACTGAGTTGACCTTTGGGTTGTGGCTCAGAGCCGAGCTG
GGCCAGGGTATGGGAAGGAGGTGGGTGAACTAGCCGCTGGCCTGGGCAACCCGGCCAGGT
GGCAAGTCTCACACTGTTGGCCGTTTGTGATGACTTCTGCCAGGTTGATGATGTGATGCT
TTTTTTTGGGGGGGGGCTCTCAAGCAGAATAAGATTGGGTGGGGGCTGGGAAGGGACATA
ATGACCTTTTGGGGGGGAAGTTTTTCTCCCTTTCATTTGAAAACTTGTTATTCCAAACCG
CTAAAATCAGATTACATCGGCTGAACCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAACCT
CGTGCCGGCACGAGGCTGAACTGGTCATAGGAAACGAATATTACTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCCAGGCNTCAAGCACAGGGTAGAGTGGTGCTGCTTCTTGGAAAAATTGAAAAAGC
TCTCTGGACGACAGGGGCCCAAAGCTGATGGCAGACAATGTCAGCCACTAACAACATAGC
CCAGGCTCGGAAGCTGGTGGAGCAGCTCCGCATCGAGGCCGGGATCGAGCGCATCAAGGT
CTCCAAAGCCTCATCTGAACTCATGAGCTACTGTGAGCAGCACGCCCGGAATGACCCCCT
GCTCGTGGGAGTCCCTGCCTCCGAGAACCCCTTTAAGGACAAGAAGCCTTGTATTATCTT
ATAGCTTTGTTTTCTTGCGCTCAACTCCTCCCCGACACCCAGCCTCCAGTCAGGGCGCCA
TTCAGTACAGAGTCCAGCAAAACTCTTAATTCCAAAAGAAATGCAAAAAGTTGCCACTGC
CCAGATGGGTTAAGATGGATCCTCTGATTTCAGATGGATTTTCAGACCCCGCAATGCAGC
CCCCTTAAGGGCCGGGCTTCTGCACCGCTTCCGATTGGAAATAACTGAAATGCCCAAGTG
GTGTGCTAACAGTTTTTGAAAACTGAGTTGACCTTTGGGTTGTGGCTCAGAGCCGAGCTG
GGCCAGGGTATGGGAAGGAGGTGGGTGAACTAGCCGCTGGCCTGGGCAACCCGGCCAGGT
GGCAAGTCTCACACTGTTGGCCGTTTGTGATGACTTCTGCCAGGTTGATGATGTGATGCT
TTTTTTTGGGGGGGGGCTCTCAAGCAGAATAAGATTGGGTGGGGGCTGGGAAGGGACATA
ATGACCTTTTGGGGGGGAAGTTTTTCTCCCTTTCATTTGAAAACTTGTTATTCCAAACCG
CTAAAATCAGATTACATCGGCTGAACCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAACCT
CGTGCCGGCACGAGGCTGAACTGGTCATAGGAAACGAATATTACTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|346512|pir||A45128

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|346512|pir||A45128

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               402-537, - strand, RNAz p=0.993459
               

               
               576-691, - strand, RNAz p=0.714262

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-537, - strand, RNAz p=0.993459
               

               
               576-691, - strand, RNAz p=0.714262

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               177-864, gnl|bosTau2|chr7 (17875511-17876199)
               

               
               177-864, gnl|Hg17|chr19 (2466147-2465429)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-864, gnl|bosTau2|chr7 (17875511-17876199)
               

               
               177-864, gnl|Hg17|chr19 (2466147-2465429)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	402-537, - strand, RNAz p=0.993459
	576-691, - strand, RNAz p=0.714262

	177-864, gnl\|bosTau2\|chr7 (17875511-17876199)
	177-864, gnl\|Hg17\|chr19 (2466147-2465429)