Non-Coding RNA Search

Ss1.1-rssp03_k1.5

Sequence:


               
               ACGAGACAGTTCCTAAACTGTCAAATTAAGTGACTTTGACTAGTCTTTTGAAAAGACTCT
TAAGTGTGGACTTCAGGCTAACTCCCCAGGGAACCATATTAAATGGGAAAAAAAAAAAAA
ATGCTCCTTTGGGTGACATACCCTGCAAAGTGTTTGCTCTTAATATGAACATAGTTGCCC
ACATTCTTAATATCTGCTATTTTTGGACAAGTGATGTTTTGTGCTGTCATCTGAACCCTA
GAGAAGCAGTGTAAGAAGAAATCTTGGTGTCACATGTATTTTAGCAAAAAGGTCATCATG
ATAGAGGGTCATGTGACCAAAAGCAGCTCCGGAAAAGCATAAGAACTTGCTTCAGGATTG
GGGGAGGGTCAGAGATACAGAAAACACTCTGCTCTATAGGAATTTTCTTCATCTCTGCAG
GAAAGTCCATTTTCTCTTTCAACACCTGGGAAGACTCAGCCAGGGAGGCTGACAGGCAAT
TCACGAAGCACAAGCGGTATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGACAGTTCCTAAACTGTCAAATTAAGTGACTTTGACTAGTCTTTTGAAAAGACTCT
TAAGTGTGGACTTCAGGCTAACTCCCCAGGGAACCATATTAAATGGGAAAAAAAAAAAAA
ATGCTCCTTTGGGTGACATACCCTGCAAAGTGTTTGCTCTTAATATGAACATAGTTGCCC
ACATTCTTAATATCTGCTATTTTTGGACAAGTGATGTTTTGTGCTGTCATCTGAACCCTA
GAGAAGCAGTGTAAGAAGAAATCTTGGTGTCACATGTATTTTAGCAAAAAGGTCATCATG
ATAGAGGGTCATGTGACCAAAAGCAGCTCCGGAAAAGCATAAGAACTTGCTTCAGGATTG
GGGGAGGGTCAGAGATACAGAAAACACTCTGCTCTATAGGAATTTTCTTCATCTCTGCAG
GAAAGTCCATTTTCTCTTTCAACACCTGGGAAGACTCAGCCAGGGAGGCTGACAGGCAAT
TCACGAAGCACAAGCGGTATCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-355, + strand, RNAz p=0.52321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-355, + strand, RNAz p=0.52321

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-503, gnl|bosTau2|chr27 (15341330-15341823)
               

               
               3-503, gnl|Hg17|chr8 (8679121-8678631)
               

               
               3-503, gnl|Mm7|chr8 (34443947-34444421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-503, gnl|bosTau2|chr27 (15341330-15341823)
               

               
               3-503, gnl|Hg17|chr8 (8679121-8678631)
               

               
               3-503, gnl|Mm7|chr8 (34443947-34444421)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ski (0.29347)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)

	3-503, gnl\|bosTau2\|chr27 (15341330-15341823)
	3-503, gnl\|Hg17\|chr8 (8679121-8678631)
	3-503, gnl\|Mm7\|chr8 (34443947-34444421)

	ski (0.29347)
	mgm (0.180343)
	sin (0.174948)
	nco (0.161734)
	lun (0.150489)
	liv (0.146284)
	ssp (0.13552)
	kid (0.129735)