Non-Coding RNA Search

Ss1.1-rssp03_p4.5

Sequence:


               
               GTGAGTTGCAGACTCGGTTCCGATCTGGCATGGCTATGGCTATAATGTAGGCCAGCAACT
ACAGCTCTGATTCATCTCCTAGTGTGGGAACTTCCATATGCCACGGGTGCAGCCCTAAAA
GGACAAAAAACAAACAACAACAAAAAAAACCCAGTGAAGCCTGTGTGATACACTATAAAG
TAGGATGAGACTGTATAGAACCAAATAACGTGGGATCTCGGGATCTTTGAAAATTATTTT
AGCATCTTTTAAATTTTTACCCTTTTATACATTAAAAGGGTTTTCCATTCAATAATGATG
ATCTCTTTCCCTATAGTCCCAGTGGTCAAAATGTCAGCTTATTTGGGTAGATGTACAATC
CATCTCACTACATTTAGAAAGCAGTCTTGGAGCTTATTTGTAACTCTAATGATGCGAGTG
TTTTGTATCATGAAGTTTTTATATGAGGAAAGCTCTTCTCAATGTATCTGTCATATAATT
TTTTACTTTCTATAAAGCATATTTAAATAATAATTGGTGTATGTTCATTTTGTTGAAAAT
GTTTTAGTGTCCAATTTAAGTACGATACTTCTATTGTTCTAAAGTTTCACAGTAAATACT
ATTTATTTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGTTGCAGACTCGGTTCCGATCTGGCATGGCTATGGCTATAATGTAGGCCAGCAACT
ACAGCTCTGATTCATCTCCTAGTGTGGGAACTTCCATATGCCACGGGTGCAGCCCTAAAA
GGACAAAAAACAAACAACAACAAAAAAAACCCAGTGAAGCCTGTGTGATACACTATAAAG
TAGGATGAGACTGTATAGAACCAAATAACGTGGGATCTCGGGATCTTTGAAAATTATTTT
AGCATCTTTTAAATTTTTACCCTTTTATACATTAAAAGGGTTTTCCATTCAATAATGATG
ATCTCTTTCCCTATAGTCCCAGTGGTCAAAATGTCAGCTTATTTGGGTAGATGTACAATC
CATCTCACTACATTTAGAAAGCAGTCTTGGAGCTTATTTGTAACTCTAATGATGCGAGTG
TTTTGTATCATGAAGTTTTTATATGAGGAAAGCTCTTCTCAATGTATCTGTCATATAATT
TTTTACTTTCTATAAAGCATATTTAAATAATAATTGGTGTATGTTCATTTTGTTGAAAAT
GTTTTAGTGTCCAATTTAAGTACGATACTTCTATTGTTCTAAAGTTTCACAGTAAATACT
ATTTATTTCTCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               285-612, gnl|bosTau2|chr27 (24140580-24140909)
               

               
               285-612, gnl|Hg17|chr8 (42998747-42999076)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               285-612, gnl|bosTau2|chr27 (24140580-24140909)
               

               
               285-612, gnl|Hg17|chr8 (42998747-42999076)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               lun (0.300978)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	285-612, gnl\|bosTau2\|chr27 (24140580-24140909)
	285-612, gnl\|Hg17\|chr8 (42998747-42999076)

	lun (0.300978)
	spl (0.286369)
	fcc (0.197785)
	csk (0.140746)
	ssp (0.13552)
	bla (0.124347)
	tra (0.123092)