Non-Coding RNA Search

Ss1.1-rssp04_f24.5

Sequence:


               
               CAAAGGCGGAAGAGAAGAGAGGACAGGACTTTCCTGGTGGGCAACATGGAGATCCGAGAG
AGGAGGCTCTTTAACCTAGATGTCCCTGAAAGCAGGAGGTGCTTCATCAAGGTGAGGGCC
TATCGGAGCGAGAGGTTCTTGCCCAGTGAGCAGATCCAGGGGGTCGTGGTCTCTGTGATC
AACCTGGAGCCCAGGGCTGGCTTTTCCTCCAACCCCAGGGCCTGGGGCCGCTTTGACAGT
GTCCTCACCGGCCCCAATGGGGCCTGTCTGCCTGCCTTCTGTGATGACCAGTCCCCGGAT
GCTTACTCCGCCTACGTTCTGGCCAGCCTGGCTGGGGAAGAACTGGAAGCCGTGGAGTCT
TCTCCTAAATTCAACCCAAATGCAATTGGCGTCCCTCAGCCCTACCTCAACAAGCTCAAG
TACCGTCGGACAGACCATGAGGACCCACGGGTCAAGAAGACGGCTTTCCAGATCAGCATG
GCCAAGCCAAGGCCCAACTCAGCTGAAGAGAGCAATGGGCCCATCTATTGCCTTTGAGAA
CTCCAGGCCTGTGAGGAGGCACCACCCAGTGCAGCCCACTTCCGGTTCTACCAGATCGAG
GGGGATCGGTATGACTACAACACGGTCCCTTTCAACGAGGATGACCCCATGAGCTGGACT
GAAGACTACCTGGCATGGTGGCCCAAGCCAATGGAGTTCAGGGCATGCTACATCAAGGTG
AAGATCGTGGGGCCACTGGAGGTGAATGTGCGATCCCGCAACATGGGGGGCACCCACCGG
CAGACAGTGGGGAAACTGTATGGAATCCGGGATGTGAAGAGCACACGGGACAGGGATCAG
CCCAATGTCTCATCTGCCTGTTTGGAGTTCAAGTGCAGTGGGATGCTGTATGACCAGGAC
CGTGTGGACCGTACACTGGTAAAGGTCATTCCCCAGGGCAGCTGCCATCGAGCCAGCGTA
AACTCCATGCTGCACGAGTACCTGGTCAACCACCTACCACTAGCTGTCAATAACGACACC
AGTGAGTACACCATGCTGGCACCCCTGGACCCCCTGGGCCATAACTATGGCATCTACACT
GTAACTGACCAGGACCCTCGCACAGCCAAGGAGATTGCACTGGGCCGATGCTTTGATGGC
AGCTCGGATGGCTCCTCCAGAGTCATGAAGAGCAATGTGGGAGTGGCCCTCACCTTTAAC
TGCGTAGAGAGGCAGGTGGGCCGTCAGAGTGCCTTCCAGTACCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGCGGAAGAGAAGAGAGGACAGGACTTTCCTGGTGGGCAACATGGAGATCCGAGAG
AGGAGGCTCTTTAACCTAGATGTCCCTGAAAGCAGGAGGTGCTTCATCAAGGTGAGGGCC
TATCGGAGCGAGAGGTTCTTGCCCAGTGAGCAGATCCAGGGGGTCGTGGTCTCTGTGATC
AACCTGGAGCCCAGGGCTGGCTTTTCCTCCAACCCCAGGGCCTGGGGCCGCTTTGACAGT
GTCCTCACCGGCCCCAATGGGGCCTGTCTGCCTGCCTTCTGTGATGACCAGTCCCCGGAT
GCTTACTCCGCCTACGTTCTGGCCAGCCTGGCTGGGGAAGAACTGGAAGCCGTGGAGTCT
TCTCCTAAATTCAACCCAAATGCAATTGGCGTCCCTCAGCCCTACCTCAACAAGCTCAAG
TACCGTCGGACAGACCATGAGGACCCACGGGTCAAGAAGACGGCTTTCCAGATCAGCATG
GCCAAGCCAAGGCCCAACTCAGCTGAAGAGAGCAATGGGCCCATCTATTGCCTTTGAGAA
CTCCAGGCCTGTGAGGAGGCACCACCCAGTGCAGCCCACTTCCGGTTCTACCAGATCGAG
GGGGATCGGTATGACTACAACACGGTCCCTTTCAACGAGGATGACCCCATGAGCTGGACT
GAAGACTACCTGGCATGGTGGCCCAAGCCAATGGAGTTCAGGGCATGCTACATCAAGGTG
AAGATCGTGGGGCCACTGGAGGTGAATGTGCGATCCCGCAACATGGGGGGCACCCACCGG
CAGACAGTGGGGAAACTGTATGGAATCCGGGATGTGAAGAGCACACGGGACAGGGATCAG
CCCAATGTCTCATCTGCCTGTTTGGAGTTCAAGTGCAGTGGGATGCTGTATGACCAGGAC
CGTGTGGACCGTACACTGGTAAAGGTCATTCCCCAGGGCAGCTGCCATCGAGCCAGCGTA
AACTCCATGCTGCACGAGTACCTGGTCAACCACCTACCACTAGCTGTCAATAACGACACC
AGTGAGTACACCATGCTGGCACCCCTGGACCCCCTGGGCCATAACTATGGCATCTACACT
GTAACTGACCAGGACCCTCGCACAGCCAAGGAGATTGCACTGGGCCGATGCTTTGATGGC
AGCTCGGATGGCTCCTCCAGAGTCATGAAGAGCAATGTGGGAGTGGCCCTCACCTTTAAC
TGCGTAGAGAGGCAGGTGGGCCGTCAGAGTGCCTTCCAGTACCTCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48526644|gb|AAT45521.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48526644|gb|AAT45521.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-319, + strand, RNAz p=0.815006
               

               
               943-1102, - strand, RNAz p=0.737326

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-319, + strand, RNAz p=0.815006
               

               
               943-1102, - strand, RNAz p=0.737326

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-706, gnl|bosTau2|chr10 (8585911-8585205)
               

               
               1-706, gnl|Hg17|chr15 (63277522-63276692)
               

               
               1-706, gnl|Mm7|chr9 (65308420-65309250)
               


               
               824-1247, gnl|bosTau2|chr10 (8585212-8584789)
               

               
               824-1247, gnl|Hg17|chr15 (63276699-63276276)
               

               
               824-1247, gnl|Mm7|chr9 (65309243-65309666)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-706, gnl|bosTau2|chr10 (8585911-8585205)
               

               
               1-706, gnl|Hg17|chr15 (63277522-63276692)
               

               
               1-706, gnl|Mm7|chr9 (65308420-65309250)
               


               
               824-1247, gnl|bosTau2|chr10 (8585212-8584789)
               

               
               824-1247, gnl|Hg17|chr15 (63276699-63276276)
               

               
               824-1247, gnl|Mm7|chr9 (65309243-65309666)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cga (0.279096)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	80-319, + strand, RNAz p=0.815006
	943-1102, - strand, RNAz p=0.737326

	1-706, gnl\|bosTau2\|chr10 (8585911-8585205)
	1-706, gnl\|Hg17\|chr15 (63277522-63276692)
	1-706, gnl\|Mm7\|chr9 (65308420-65309250)

	824-1247, gnl\|bosTau2\|chr10 (8585212-8584789)
	824-1247, gnl\|Hg17\|chr15 (63276699-63276276)
	824-1247, gnl\|Mm7\|chr9 (65309243-65309666)

	cga (0.279096)
	ton (0.1755)
	tbr (0.154178)
	cag (0.151194)
	nca (0.136874)
	ssp (0.13552)
	ese (0.126502)
	eru (0.120048)