Non-Coding RNA Search

Ss1.1-rssp04_j21.5

Sequence:


               
               GTTTCCCTTCAGAGATTCCCTGTCCCCACCAGGAATTTTTAAACCAAAACACCCAAACTT
GGCAGCTTTTTCTGTGGAGGACAGACGGCCGGCCAGACCTCTGAGCACATGGTGTCCTGA
CCACCCACCAGCTCCTCCAGCCCTGTCGGGCCCGTGCCCGGGGGACCCCTGCCCCTCTCA
GGCCTCTCCTCCCGGGCCACCCTCACCTCCGTTTGATAGACTTTGTGAATCTGTGGACTG
CTCTACTTTAAGAAGATGACCAGTTTGGAGTAATCAGAATTAATCCCCCTTCTTTTTAAG
GATTTTTTTTCCTAAAAAGCTATTCATCGCTCCTAATGAAAGACCAGATCCTTGAAGAAG
TTTGTGGTATAAAAGGAAGTGGGGACAGATTGGCAGCGCAGAGTCCTTGGCCTGTTTCAC
TCCTGCTTCTCTCAGCCAGCCTTAGGGAGGGCCGCGTGATGCTCGTGTGGTATGTGGGGA
ACGGCAGCAGTGAAGCAGCAGCCGCCAAGGGGTAGTAGGGGGTGGGACAGGGAGGGAGGA
TCGGGTGGGGTAGAGGTTTTGTATTGAGGGCCAGTGATGATGTTTTGATATTTATTTCCT
GCTACTGAAATTTGAATCTGAGTGGATTGTCCCTGTTTCTGATGATGTCGGTATTGCAAA
GCGACAGATTCATAAAGCAATGATCAAATCTTCCTTTCTTTCCGTGTGTATTTCTAAGAA
ATAGAGTCAACTGATTTTGTATGTAAATACCAAGAGCAGTTCACCTGGTACTAAACCCGC
ACCTCAGTGCGGACCCCTCCCCACCCTCACCCCGCTCCCCTTCCACCTGTCCTGGAAACC
TGTCCCCGTTGTGTGATCCAGCCCTGGTCTGGCTGCGGTCAGCAGATCCCAGTGAAGGGT
TTTGTGTGTTTAGGCCTCATTTCTTTGTCTTTTTCCTACTCTGTTCCCGGCATTTGCTGA
TTTCTAGTGTATACTCTGTAGTCTCAGTCCGTGTTTGATTCCATTCCATGGAAATAAAAA
GTATGTTGTACATACTGCTAAAATATCGTCTTGCAAGTTAAGGCTTCCCCCTTTACTATA
AGACTATAAATAAAAACTTATTTTATCCTTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCCCTTCAGAGATTCCCTGTCCCCACCAGGAATTTTTAAACCAAAACACCCAAACTT
GGCAGCTTTTTCTGTGGAGGACAGACGGCCGGCCAGACCTCTGAGCACATGGTGTCCTGA
CCACCCACCAGCTCCTCCAGCCCTGTCGGGCCCGTGCCCGGGGGACCCCTGCCCCTCTCA
GGCCTCTCCTCCCGGGCCACCCTCACCTCCGTTTGATAGACTTTGTGAATCTGTGGACTG
CTCTACTTTAAGAAGATGACCAGTTTGGAGTAATCAGAATTAATCCCCCTTCTTTTTAAG
GATTTTTTTTCCTAAAAAGCTATTCATCGCTCCTAATGAAAGACCAGATCCTTGAAGAAG
TTTGTGGTATAAAAGGAAGTGGGGACAGATTGGCAGCGCAGAGTCCTTGGCCTGTTTCAC
TCCTGCTTCTCTCAGCCAGCCTTAGGGAGGGCCGCGTGATGCTCGTGTGGTATGTGGGGA
ACGGCAGCAGTGAAGCAGCAGCCGCCAAGGGGTAGTAGGGGGTGGGACAGGGAGGGAGGA
TCGGGTGGGGTAGAGGTTTTGTATTGAGGGCCAGTGATGATGTTTTGATATTTATTTCCT
GCTACTGAAATTTGAATCTGAGTGGATTGTCCCTGTTTCTGATGATGTCGGTATTGCAAA
GCGACAGATTCATAAAGCAATGATCAAATCTTCCTTTCTTTCCGTGTGTATTTCTAAGAA
ATAGAGTCAACTGATTTTGTATGTAAATACCAAGAGCAGTTCACCTGGTACTAAACCCGC
ACCTCAGTGCGGACCCCTCCCCACCCTCACCCCGCTCCCCTTCCACCTGTCCTGGAAACC
TGTCCCCGTTGTGTGATCCAGCCCTGGTCTGGCTGCGGTCAGCAGATCCCAGTGAAGGGT
TTTGTGTGTTTAGGCCTCATTTCTTTGTCTTTTTCCTACTCTGTTCCCGGCATTTGCTGA
TTTCTAGTGTATACTCTGTAGTCTCAGTCCGTGTTTGATTCCATTCCATGGAAATAAAAA
GTATGTTGTACATACTGCTAAAATATCGTCTTGCAAGTTAAGGCTTCCCCCTTTACTATA
AGACTATAAATAAAAACTTATTTTATCCTTCAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               1-890, gnl|bosTau2|chr10 (52511954-52511068)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-890, gnl|bosTau2|chr10 (52511954-52511068)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               pgl (0.592417)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               ssp (0.271039)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.592417)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               ssp (0.271039)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	pgl (0.592417)
	vin (0.332557)
	nco (0.323468)
	ssp (0.271039)
	aor (0.195274)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	mcp (0.170648)
	cki (0.165235)
	csp (0.161186)
	hyp (0.142837)
	cst (0.140036)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)