Ss1.1-rssp04_n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGGGACAGCTGGAGGCGGCGGCGGTGGTGACTGGCATAACTTTACGAAAGGAAAGAT AATTTGCGTCTGCCCTTTCCGCCAGAAATGGCCAATGTGCTCTGTAACAGAGCCAGATTG GTTTCCTATCTGCCAGGATTTTGCTCTTTAGTTAAAAAGGTTGTCAATCCAAGAGCCTTT TCAACTGCAGGATCTTCAGGTTCTGATGAGTCTCATGTGGCCACTGCACCTCCAGATATA TGCTCTCGAACAGTATGGCCGGATGAAACTATGGGACCATTTGGGCCTCAGGATCAGAGA TTCCAGCTTCCTGGAAACATAGGTTTTGATTGTCATCTCAATGGGACCACATCACAGAAG AAAAGCCAGGTTCATAGAACTTTACCTGATATTTTAGCAGAACCTTTATCAAGTGAAAGA CATGAGTTTGTAATGGCACAGTATGTGAATGAATTTCAGAATAATGATGCACCTGTTGAG CAAGAAATTAACAGTGCAGAAACCTACTTTGAAAGTGCCAAAGTAGAGTGTGCAATCCAG ACATGTCCAGAATTGCTGCGAAAAGATTTTGAATCACTGTTTCCAGAGGTAGCTACCAAC AAACTAATGATCCTGACTGTAACACAGAAAACTAAGAATGATATGACTGTTTGGAGTGAG GAGGTAGAAAATGAAAGAGAAATGCTCTTAGAAAAGTTCATCAACGGTGCTAAAGAAATC TGCTATGCTCTTCGAGCGGAAGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTG GCATTTTTTGGACCATATACAAACAACACTCTTTTTGAGACAGATGAACGCTATCGACAT TTAGGATTCTCCGTTGATGATCTTGGCTGCTGTAAAGTGATTCGTCACAGTCTCTGGGGT ACCCACGTGGTTGTAGGAAGTATCTTCACTAATGCAACACCGGACAGCCATATTATGAAG AAATTAAGTGGAAACTAGCAGTAATGTCAACTTATTTGCTCTACTATTTGTATGTAACAA TTTGGGATGATCTATAAACATTGGCAAAAACATTCAGTTTTTAAAATTTACTTGTAGGTA TTTATTTCAACATTTATGAATTTACACTTTTGGCAGGTGGTTTGTGATCTTTTAAATTTC GCATTGTTCATTCATTAAGCACATACTAAGCACATCCACATTGTACCTAATGTGGTAATT AACATGTAACCAGGGTATCATCTCTTATTATTTCTCCTCTTTATTGGAAAAAAAAAAACC TCAGTTTTAATTATTTTTCTCCAAAAATAAATCATACATTTGGTTCTGATCATATGCCTT TTTCATTGCAATATTTTAAAAATACAGCTTTTAAGATTCTTAAGAAACTACAGTATTAAT CTTTTTGAAGTTTTTTTAAATAAATGCAATGATAAGTCTGAATTGTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGGGACAGCTGGAGGCGGCGGCGGTGGTGACTGGCATAACTTTACGAAAGGAAAGAT AATTTGCGTCTGCCCTTTCCGCCAGAAATGGCCAATGTGCTCTGTAACAGAGCCAGATTG GTTTCCTATCTGCCAGGATTTTGCTCTTTAGTTAAAAAGGTTGTCAATCCAAGAGCCTTT TCAACTGCAGGATCTTCAGGTTCTGATGAGTCTCATGTGGCCACTGCACCTCCAGATATA TGCTCTCGAACAGTATGGCCGGATGAAACTATGGGACCATTTGGGCCTCAGGATCAGAGA TTCCAGCTTCCTGGAAACATAGGTTTTGATTGTCATCTCAATGGGACCACATCACAGAAG AAAAGCCAGGTTCATAGAACTTTACCTGATATTTTAGCAGAACCTTTATCAAGTGAAAGA CATGAGTTTGTAATGGCACAGTATGTGAATGAATTTCAGAATAATGATGCACCTGTTGAG CAAGAAATTAACAGTGCAGAAACCTACTTTGAAAGTGCCAAAGTAGAGTGTGCAATCCAG ACATGTCCAGAATTGCTGCGAAAAGATTTTGAATCACTGTTTCCAGAGGTAGCTACCAAC AAACTAATGATCCTGACTGTAACACAGAAAACTAAGAATGATATGACTGTTTGGAGTGAG GAGGTAGAAAATGAAAGAGAAATGCTCTTAGAAAAGTTCATCAACGGTGCTAAAGAAATC TGCTATGCTCTTCGAGCGGAAGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTG GCATTTTTTGGACCATATACAAACAACACTCTTTTTGAGACAGATGAACGCTATCGACAT TTAGGATTCTCCGTTGATGATCTTGGCTGCTGTAAAGTGATTCGTCACAGTCTCTGGGGT ACCCACGTGGTTGTAGGAAGTATCTTCACTAATGCAACACCGGACAGCCATATTATGAAG AAATTAAGTGGAAACTAGCAGTAATGTCAACTTATTTGCTCTACTATTTGTATGTAACAA TTTGGGATGATCTATAAACATTGGCAAAAACATTCAGTTTTTAAAATTTACTTGTAGGTA TTTATTTCAACATTTATGAATTTACACTTTTGGCAGGTGGTTTGTGATCTTTTAAATTTC GCATTGTTCATTCATTAAGCACATACTAAGCACATCCACATTGTACCTAATGTGGTAATT AACATGTAACCAGGGTATCATCTCTTATTATTTCTCCTCTTTATTGGAAAAAAAAAAACC TCAGTTTTAATTATTTTTCTCCAAAAATAAATCATACATTTGGTTCTGATCATATGCCTT TTTCATTGCAATATTTTAAAAATACAGCTTTTAAGATTCTTAAGAAACTACAGTATTAAT CTTTTTGAAGTTTTTTTAAATAAATGCAATGATAAGTCTGAATTGTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1139-1246, + strand, RNAz p=0.902096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1139-1246, + strand, RNAz p=0.902096 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR595331, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 242-459, gnl|bosTau2|chr2 (33017995-33017778) | |
| 242-459, gnl|canFam2|chr14 (30637673-30637509) | |
| 242-459, gnl|danRer3|chrNA (77212675-77212838) | |
| 242-459, gnl|echTel1|scaffold_250840 (3117-2953) | |
| 242-459, gnl|fr1|chrUn (259627122-259627268) | |
| 242-459, gnl|galGal2|chr7 (35595888-35596052) | |
| 242-459, gnl|hg17|chr11 (34313757-34313921) | |
| 242-459, gnl|Hg17|chr2 (150261670-150261453) | |
| 242-459, gnl|loxAfr1|scaffold_42106 (5481-5644) | |
| 242-459, gnl|mm7|chr2 (50298596-50298760) | |
| 242-459, gnl|Mm7|chr2 (50298813-50298596) | |
| 242-459, gnl|monDom2|scaffold_1 (105593748-105593585) | |
| 242-459, gnl|oryCun1|scaffold_176509 (107901-107737) | |
| 242-459, gnl|panTro1|chr9 (34702796-34702960) | |
| 242-459, gnl|rheMac2|chr14 (37484425-37484281) | |
| 242-459, gnl|rn3|chr3 (31133310-31133474) | |
| 242-459, gnl|tetNig1|chr3 (3988571-3988733) | |
| 242-459, gnl|xenTro1|scaffold_494 (85181-85344) | |
| 564-701, gnl|bosTau2|chr2 (33014826-33014689) | |
| 564-701, gnl|canFam2|chr19 (54180546-54180687) | |
| 564-701, gnl|danRer3|chr19 (4840241-4840099) | |
| 564-701, gnl|dasNov1|scaffold_250126 (422-281) | |
| 564-701, gnl|echTel1|scaffold_250840 (8263-8124) | |
| 564-701, gnl|fr1|chrUn (259626159-259626300) | |
| 564-701, gnl|galGal2|chr7 (35592602-35592740) | |
| 564-701, gnl|hg17|chr2 (150257725-150257866) | |
| 564-701, gnl|Hg17|chr2 (150257865-150257728) | |
| 564-701, gnl|mm7|chr2 (50295098-50295239) | |
| 564-701, gnl|Mm7|chr2 (50295238-50295101) | |
| 564-701, gnl|monDom2|scaffold_2 (40082320-40082458) | |
| 564-701, gnl|oryCun1|scaffold_170849 (6520-6661) | |
| 564-701, gnl|panTro1|chr13 (39319314-39319455) | |
| 564-701, gnl|rheMac2|chr12 (13240603-13240744) | |
| 564-701, gnl|rn3|chr3 (31128713-31128854) | |
| 564-701, gnl|xenTro1|scaffold_494 (82706-82847) | |
| 784-1361, gnl|bosTau2|chr2 (33009427-33008860) | |
| 784-1361, gnl|Hg17|chr2 (150252190-150251602) | |
| 784-1361, gnl|Mm7|chr2 (50287713-50287107) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 242-459, gnl|bosTau2|chr2 (33017995-33017778) | |
| 242-459, gnl|canFam2|chr14 (30637673-30637509) | |
| 242-459, gnl|danRer3|chrNA (77212675-77212838) | |
| 242-459, gnl|echTel1|scaffold_250840 (3117-2953) | |
| 242-459, gnl|fr1|chrUn (259627122-259627268) | |
| 242-459, gnl|galGal2|chr7 (35595888-35596052) | |
| 242-459, gnl|hg17|chr11 (34313757-34313921) | |
| 242-459, gnl|Hg17|chr2 (150261670-150261453) | |
| 242-459, gnl|loxAfr1|scaffold_42106 (5481-5644) | |
| 242-459, gnl|mm7|chr2 (50298596-50298760) | |
| 242-459, gnl|Mm7|chr2 (50298813-50298596) | |
| 242-459, gnl|monDom2|scaffold_1 (105593748-105593585) | |
| 242-459, gnl|oryCun1|scaffold_176509 (107901-107737) | |
| 242-459, gnl|panTro1|chr9 (34702796-34702960) | |
| 242-459, gnl|rheMac2|chr14 (37484425-37484281) | |
| 242-459, gnl|rn3|chr3 (31133310-31133474) | |
| 242-459, gnl|tetNig1|chr3 (3988571-3988733) | |
| 242-459, gnl|xenTro1|scaffold_494 (85181-85344) | |
| 564-701, gnl|bosTau2|chr2 (33014826-33014689) | |
| 564-701, gnl|canFam2|chr19 (54180546-54180687) | |
| 564-701, gnl|danRer3|chr19 (4840241-4840099) | |
| 564-701, gnl|dasNov1|scaffold_250126 (422-281) | |
| 564-701, gnl|echTel1|scaffold_250840 (8263-8124) | |
| 564-701, gnl|fr1|chrUn (259626159-259626300) | |
| 564-701, gnl|galGal2|chr7 (35592602-35592740) | |
| 564-701, gnl|hg17|chr2 (150257725-150257866) | |
| 564-701, gnl|Hg17|chr2 (150257865-150257728) | |
| 564-701, gnl|mm7|chr2 (50295098-50295239) | |
| 564-701, gnl|Mm7|chr2 (50295238-50295101) | |
| 564-701, gnl|monDom2|scaffold_2 (40082320-40082458) | |
| 564-701, gnl|oryCun1|scaffold_170849 (6520-6661) | |
| 564-701, gnl|panTro1|chr13 (39319314-39319455) | |
| 564-701, gnl|rheMac2|chr12 (13240603-13240744) | |
| 564-701, gnl|rn3|chr3 (31128713-31128854) | |
| 564-701, gnl|xenTro1|scaffold_494 (82706-82847) | |
| 784-1361, gnl|bosTau2|chr2 (33009427-33008860) | |
| 784-1361, gnl|Hg17|chr2 (150252190-150251602) | |
| 784-1361, gnl|Mm7|chr2 (50287713-50287107) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| mgp (0.692042) | |
| ssp (0.677599) | |
| tbr (0.616713) | |
| isp (0.601504) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| kid (0.518941) | |
| ret (0.514933) | |
| nms (0.427716) | |
| ste (0.405625) | |
| col (0.390016) | |
| sag (0.36543) | |
| rec (0.346141) | |
| spc (0.340097) | |
| nco (0.323468) | |
| fco (0.314416) | |
| sme (0.305437) | |
| ski (0.29347) | |
| csk (0.281492) | |
| sug (0.254582) | |
| thg (0.253582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.692042) | |
| ssp (0.677599) | |
| tbr (0.616713) | |
| isp (0.601504) | |
| gul (0.532765) | |
| lyg (0.532411) | |
| kid (0.518941) | |
| ret (0.514933) | |
| nms (0.427716) | |
| ste (0.405625) | |
| col (0.390016) | |
| sag (0.36543) | |
| rec (0.346141) | |
| spc (0.340097) | |
| nco (0.323468) | |
| fco (0.314416) | |
| sme (0.305437) | |
| ski (0.29347) | |
| csk (0.281492) | |
| sug (0.254582) | |
| thg (0.253582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| jca (0.11396) |