Ss1.1-rssp05_e9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCACCTGACCCTGGAGGGAGAGGAGGAGGAGGTTGGGGAGGTTCAGCAGAGGTGTGC GGAGAAGTCCCTGTCAGAAGCCGCAGAAGACCCCAATGTCGGGGGCCTGAACCCAGACCC CACAGACGGCAAGACCCTTCAAGAGCAAATGGACGAACTGTTAGAGAGATGCTTCCTGCA TGCTTTGAAGTGCCGACTCAAAAAGGCCGACCTCCCTTTACTCACCAGCACTCTCCTGGG CAGCCACATGTTCTCCTGCTGCCCCGAGGGACGACAGCTGGACGTAAAGAAGTCAAGCTA CAAAAAGCTCTCTAAGTTCCTGCAGCACATGCAGCAGGAGCAGATTATACAGGTGAAGGA GCTGAGCCAAGGGGTGGAGAGCATTGTGGCTGTGGACTGGAAGCACCCGAGGATCACATC TTTCGTCATACCCGAGCCCTCCCCGACCTCTCAGACAGTCCAGGAGGGTAGCAGGGAACA GCCCTATCACCCTCCAGATATAAAATCCCTCTACTGTGTCCCAGCCAGCATGACCCTGCT CTTCCAGGAGTCTGGCCACAAGAAGGGGAGCATTCTCGAGGGCGGCGAGGTCCGAACGAT CGTCATCAGCTACGCCAAGAAACATGACCTGGTTGATGCAGACAACAAGAATCTGGTGAA ATTGGATCCCATCCTATGTGACTGCATCTTAGAGAAAAATGAACAGCACACAGTCATGAA GCTTCCATGGGACAGTCTCCTGAGCAGATGTTTGGAAAAATTGCAGCCTGCCTATCAAGT AACCTTTCCGGGACAAGAGCCCATTGTGAAGAAAGGCAAAATCTGCCCAATCGACATCAC ACTAGCACAGAGAGCTTCTAATAAAAAGGTGACCGTGGTCAGGAACTTGGAGGCCTACGG TCTGGACCCGTACTCAGTGGCAGCCATCCTCCAGCAGCGATGCCAGGCTAGCACCACTGT CACTCCTGCCCCCGGGGCCAAGGACAGCCTGCAGGTCCAGATTCAGGGAAACCAGGTCCA CCACCTCGGCCGGCTCTTGCTTGATGAGTATCAGCTTCCTCGAAAATACATCCAAGGCCT GGAAAAGGCCCCCAAACCTGGCAAGAAGAAATGACAGACTCTTGTTTCATGTGGTCGATC CAGTGGAAATCCAAGCTCTGGCCTGGTAATTTATATGAGTATTTTGAGCTTTTGCGAATT AAAAAAATATATAATTCTTTACCAAAATAAATTTTTATTCTCATCTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCACCTGACCCTGGAGGGAGAGGAGGAGGAGGTTGGGGAGGTTCAGCAGAGGTGTGC GGAGAAGTCCCTGTCAGAAGCCGCAGAAGACCCCAATGTCGGGGGCCTGAACCCAGACCC CACAGACGGCAAGACCCTTCAAGAGCAAATGGACGAACTGTTAGAGAGATGCTTCCTGCA TGCTTTGAAGTGCCGACTCAAAAAGGCCGACCTCCCTTTACTCACCAGCACTCTCCTGGG CAGCCACATGTTCTCCTGCTGCCCCGAGGGACGACAGCTGGACGTAAAGAAGTCAAGCTA CAAAAAGCTCTCTAAGTTCCTGCAGCACATGCAGCAGGAGCAGATTATACAGGTGAAGGA GCTGAGCCAAGGGGTGGAGAGCATTGTGGCTGTGGACTGGAAGCACCCGAGGATCACATC TTTCGTCATACCCGAGCCCTCCCCGACCTCTCAGACAGTCCAGGAGGGTAGCAGGGAACA GCCCTATCACCCTCCAGATATAAAATCCCTCTACTGTGTCCCAGCCAGCATGACCCTGCT CTTCCAGGAGTCTGGCCACAAGAAGGGGAGCATTCTCGAGGGCGGCGAGGTCCGAACGAT CGTCATCAGCTACGCCAAGAAACATGACCTGGTTGATGCAGACAACAAGAATCTGGTGAA ATTGGATCCCATCCTATGTGACTGCATCTTAGAGAAAAATGAACAGCACACAGTCATGAA GCTTCCATGGGACAGTCTCCTGAGCAGATGTTTGGAAAAATTGCAGCCTGCCTATCAAGT AACCTTTCCGGGACAAGAGCCCATTGTGAAGAAAGGCAAAATCTGCCCAATCGACATCAC ACTAGCACAGAGAGCTTCTAATAAAAAGGTGACCGTGGTCAGGAACTTGGAGGCCTACGG TCTGGACCCGTACTCAGTGGCAGCCATCCTCCAGCAGCGATGCCAGGCTAGCACCACTGT CACTCCTGCCCCCGGGGCCAAGGACAGCCTGCAGGTCCAGATTCAGGGAAACCAGGTCCA CCACCTCGGCCGGCTCTTGCTTGATGAGTATCAGCTTCCTCGAAAATACATCCAAGGCCT GGAAAAGGCCCCCAAACCTGGCAAGAAGAAATGACAGACTCTTGTTTCATGTGGTCGATC CAGTGGAAATCCAAGCTCTGGCCTGGTAATTTATATGAGTATTTTGAGCTTTTGCGAATT AAAAAAATATATAATTCTTTACCAAAATAAATTTTTATTCTCATCTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 306-412, + strand, RNAz p=0.915227 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 306-412, + strand, RNAz p=0.915227 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 136-261, gnl|bosTau2|chr16 (3121639-3121514) | |
| 136-261, gnl|canFam2|chr38 (5862777-5862920) | |
| 136-261, gnl|danRer3|chr8 (33948616-33948754) | |
| 136-261, gnl|dasNov1|scaffold_143466 (671-554) | |
| 136-261, gnl|echTel1|scaffold_172603 (3288-3149) | |
| 136-261, gnl|fr1|chrUn (81159849-81159708) | |
| 136-261, gnl|hg17|chr1 (203164077-203164220) | |
| 136-261, gnl|Hg17|chr1 (203164210-203164085) | |
| 136-261, gnl|loxAfr1|scaffold_5536 (5632-5494) | |
| 136-261, gnl|mm7|chr1 (131065530-131065389) | |
| 136-261, gnl|Mm7|chr1 (131065396-131065521) | |
| 136-261, gnl|monDom2|scaffold_13 (8617223-8617365) | |
| 136-261, gnl|oryCun1|scaffold_203319 (52185-52043) | |
| 136-261, gnl|panTro1|chr1 (186749695-186749838) | |
| 136-261, gnl|rheMac2|chr1 (163762095-163761952) | |
| 136-261, gnl|rn3|chr13 (44120902-44120760) | |
| 136-261, gnl|tetNig1|chr9 (6371427-6371556) | |
| 136-261, gnl|xenTro1|scaffold_736 (408286-408141) | |
| 306-412, gnl|bosTau2|chr16 (3119452-3119346) | |
| 306-412, gnl|canFam2|chr38 (5860092-5860224) | |
| 306-412, gnl|danRer3|chr8 (33946002-33946122) | |
| 306-412, gnl|dasNov1|scaffold_2503 (2497-2629) | |
| 306-412, gnl|echTel1|scaffold_172603 (5392-5261) | |
| 306-412, gnl|fr1|chrUn (81160166-81160027) | |
| 306-412, gnl|galGal2|chr26 (1090196-1090313) | |
| 306-412, gnl|hg17|chr1 (203161477-203161609) | |
| 306-412, gnl|Hg17|chr1 (203161587-203161481) | |
| 306-412, gnl|loxAfr1|scaffold_5536 (7966-7834) | |
| 306-412, gnl|mm7|chr1 (131068632-131068503) | |
| 306-412, gnl|Mm7|chr1 (131068520-131068626) | |
| 306-412, gnl|monDom2|scaffold_13 (8615533-8615665) | |
| 306-412, gnl|oryCun1|scaffold_203319 (54983-54852) | |
| 306-412, gnl|panTro1|chr1 (186747126-186747258) | |
| 306-412, gnl|rheMac2|chr1 (163764715-163764583) | |
| 306-412, gnl|rn3|chr13 (44123545-44123416) | |
| 306-412, gnl|tetNig1|chr9 (6371098-6371211) | |
| 745-870, gnl|bosTau2|chr16 (3116549-3116424) | |
| 745-870, gnl|canFam2|chr38 (5856911-5857017) | |
| 745-870, gnl|danRer3|chr8 (33943837-33943935) | |
| 745-870, gnl|dasNov1|scaffold_11719 (27470-27573) | |
| 745-870, gnl|echTel1|scaffold_311777 (98255-98360) | |
| 745-870, gnl|fr1|chrUn (81162485-81162387) | |
| 745-870, gnl|galGal2|chr26 (1088113-1088219) | |
| 745-870, gnl|hg17|chr1 (203157452-203157558) | |
| 745-870, gnl|Hg17|chr1 (203157585-203157460) | |
| 745-870, gnl|loxAfr1|scaffold_5536 (11377-11272) | |
| 745-870, gnl|mm7|chr1 (131072371-131072265) | |
| 745-870, gnl|Mm7|chr1 (131072236-131072361) | |
| 745-870, gnl|monDom2|scaffold_13 (8607617-8607720) | |
| 745-870, gnl|oryCun1|scaffold_203319 (58164-58056) | |
| 745-870, gnl|panTro1|chr1 (186743108-186743214) | |
| 745-870, gnl|rheMac2|chr1 (163768669-163768567) | |
| 745-870, gnl|rn3|chr13 (44127276-44127170) | |
| 745-870, gnl|tetNig1|chr9 (6369207-6369306) | |
| 1043-1245, gnl|bosTau2|chr16 (3109515-3109304) | |
| 1043-1245, gnl|canFam2|chr38 (5851796-5851941) | |
| 1043-1245, gnl|danRer3|chr8 (33939653-33939796) | |
| 1043-1245, gnl|dasNov1|scaffold_11719 (23163-23313) | |
| 1043-1245, gnl|echTel1|scaffold_311777 (93929-94079) | |
| 1043-1245, gnl|hg17|chr1 (203153339-203153489) | |
| 1043-1245, gnl|Hg17|chr1 (203153573-203153373) | |
| 1043-1245, gnl|loxAfr1|scaffold_5536 (18477-18326) | |
| 1043-1245, gnl|mm7|chr1 (131077646-131077501) | |
| 1043-1245, gnl|Mm7|chr1 (131077422-131077613) | |
| 1043-1245, gnl|monDom2|scaffold_13 (8604701-8604849) | |
| 1043-1245, gnl|oryCun1|scaffold_203945 (3122-2977) | |
| 1043-1245, gnl|panTro1|chr1 (186739054-186739204) | |
| 1043-1245, gnl|rheMac2|chr1 (163772681-163772532) | |
| 1043-1245, gnl|rn3|chr13 (44132749-44132604) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-261, gnl|bosTau2|chr16 (3121639-3121514) | |
| 136-261, gnl|canFam2|chr38 (5862777-5862920) | |
| 136-261, gnl|danRer3|chr8 (33948616-33948754) | |
| 136-261, gnl|dasNov1|scaffold_143466 (671-554) | |
| 136-261, gnl|echTel1|scaffold_172603 (3288-3149) | |
| 136-261, gnl|fr1|chrUn (81159849-81159708) | |
| 136-261, gnl|hg17|chr1 (203164077-203164220) | |
| 136-261, gnl|Hg17|chr1 (203164210-203164085) | |
| 136-261, gnl|loxAfr1|scaffold_5536 (5632-5494) | |
| 136-261, gnl|mm7|chr1 (131065530-131065389) | |
| 136-261, gnl|Mm7|chr1 (131065396-131065521) | |
| 136-261, gnl|monDom2|scaffold_13 (8617223-8617365) | |
| 136-261, gnl|oryCun1|scaffold_203319 (52185-52043) | |
| 136-261, gnl|panTro1|chr1 (186749695-186749838) | |
| 136-261, gnl|rheMac2|chr1 (163762095-163761952) | |
| 136-261, gnl|rn3|chr13 (44120902-44120760) | |
| 136-261, gnl|tetNig1|chr9 (6371427-6371556) | |
| 136-261, gnl|xenTro1|scaffold_736 (408286-408141) | |
| 306-412, gnl|bosTau2|chr16 (3119452-3119346) | |
| 306-412, gnl|canFam2|chr38 (5860092-5860224) | |
| 306-412, gnl|danRer3|chr8 (33946002-33946122) | |
| 306-412, gnl|dasNov1|scaffold_2503 (2497-2629) | |
| 306-412, gnl|echTel1|scaffold_172603 (5392-5261) | |
| 306-412, gnl|fr1|chrUn (81160166-81160027) | |
| 306-412, gnl|galGal2|chr26 (1090196-1090313) | |
| 306-412, gnl|hg17|chr1 (203161477-203161609) | |
| 306-412, gnl|Hg17|chr1 (203161587-203161481) | |
| 306-412, gnl|loxAfr1|scaffold_5536 (7966-7834) | |
| 306-412, gnl|mm7|chr1 (131068632-131068503) | |
| 306-412, gnl|Mm7|chr1 (131068520-131068626) | |
| 306-412, gnl|monDom2|scaffold_13 (8615533-8615665) | |
| 306-412, gnl|oryCun1|scaffold_203319 (54983-54852) | |
| 306-412, gnl|panTro1|chr1 (186747126-186747258) | |
| 306-412, gnl|rheMac2|chr1 (163764715-163764583) | |
| 306-412, gnl|rn3|chr13 (44123545-44123416) | |
| 306-412, gnl|tetNig1|chr9 (6371098-6371211) | |
| 745-870, gnl|bosTau2|chr16 (3116549-3116424) | |
| 745-870, gnl|canFam2|chr38 (5856911-5857017) | |
| 745-870, gnl|danRer3|chr8 (33943837-33943935) | |
| 745-870, gnl|dasNov1|scaffold_11719 (27470-27573) | |
| 745-870, gnl|echTel1|scaffold_311777 (98255-98360) | |
| 745-870, gnl|fr1|chrUn (81162485-81162387) | |
| 745-870, gnl|galGal2|chr26 (1088113-1088219) | |
| 745-870, gnl|hg17|chr1 (203157452-203157558) | |
| 745-870, gnl|Hg17|chr1 (203157585-203157460) | |
| 745-870, gnl|loxAfr1|scaffold_5536 (11377-11272) | |
| 745-870, gnl|mm7|chr1 (131072371-131072265) | |
| 745-870, gnl|Mm7|chr1 (131072236-131072361) | |
| 745-870, gnl|monDom2|scaffold_13 (8607617-8607720) | |
| 745-870, gnl|oryCun1|scaffold_203319 (58164-58056) | |
| 745-870, gnl|panTro1|chr1 (186743108-186743214) | |
| 745-870, gnl|rheMac2|chr1 (163768669-163768567) | |
| 745-870, gnl|rn3|chr13 (44127276-44127170) | |
| 745-870, gnl|tetNig1|chr9 (6369207-6369306) | |
| 1043-1245, gnl|bosTau2|chr16 (3109515-3109304) | |
| 1043-1245, gnl|canFam2|chr38 (5851796-5851941) | |
| 1043-1245, gnl|danRer3|chr8 (33939653-33939796) | |
| 1043-1245, gnl|dasNov1|scaffold_11719 (23163-23313) | |
| 1043-1245, gnl|echTel1|scaffold_311777 (93929-94079) | |
| 1043-1245, gnl|hg17|chr1 (203153339-203153489) | |
| 1043-1245, gnl|Hg17|chr1 (203153573-203153373) | |
| 1043-1245, gnl|loxAfr1|scaffold_5536 (18477-18326) | |
| 1043-1245, gnl|mm7|chr1 (131077646-131077501) | |
| 1043-1245, gnl|Mm7|chr1 (131077422-131077613) | |
| 1043-1245, gnl|monDom2|scaffold_13 (8604701-8604849) | |
| 1043-1245, gnl|oryCun1|scaffold_203945 (3122-2977) | |
| 1043-1245, gnl|panTro1|chr1 (186739054-186739204) | |
| 1043-1245, gnl|rheMac2|chr1 (163772681-163772532) | |
| 1043-1245, gnl|rn3|chr13 (44132749-44132604) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| pro (0.512033) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| sme (0.305437) | |
| spl (0.286369) | |
| nep (0.183925) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| eje (0.0988338) |